UBERON:0000075: Difference between revisions
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|located_in= | |located_in= | ||
|name=subdivision of skeletal system | |name=subdivision of skeletal system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001434 | |part_of=UBERON:0001434 | ||
Latest revision as of 17:05, 12 September 2014
| Name: | subdivision of skeletal system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003] | ||
| Xrefs: |
| ||
| Synonyms: |
"skeletal system part" RELATED [] "skeletal system subdivision" EXACT [FMA:85544] | ||
| Alt_id: | UBERON:0010322 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011216(organ system subdivision) |
|---|---|
| part_of: | UBERON:0001434(skeletal system) |
Children
| is a: | UBERON:0001130 (vertebral column),UBERON:0002517 (basicranium),UBERON:0003128 (cranium),UBERON:0003129 (skull),UBERON:0004761 (cartilaginous neurocranium),UBERON:0010323 (cranial skeletal system),UBERON:0011137 (axial skeletal system),UBERON:0011138 (post-cranial axial skeletal system),UBERON:0011158 (primary subdivision of skull),UBERON:0011159 (primary subdivision of cranial skeletal system),UBERON:0011249 (appendicular skeletal system) |
|---|---|
| part of: | UBERON:0010912 (subdivision of skeleton) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
... further results Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000075 (subdivision of skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.88e-51 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_401b79322dc7bcdcd2810a036c808ab0 | p@chr3:174737010..174737023, + |
| 1.88e-51 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_401b79322dc7bcdcd2810a036c808ab0 | p@chr3:174737010..174737023, + |
| 2.62e-44 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_ed8758bb90017b2982c753d61f9e8f2f | p4@PAX1 |
| 2.62e-44 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_ed8758bb90017b2982c753d61f9e8f2f | p4@PAX1 |
| 5.38e-44 | FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_0f65b1f68670eeb5c25b2468bf65455b | p@chr1:24217213..24217226, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_0f65b1f68670eeb5c25b2468bf65455b | p@chr1:24217213..24217226, + |
| 7.83e-38 | FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_33653884859d73f39ced41f212773751 | p@chr22:23586671..23586679, + |
| 7.83e-38 | FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_33653884859d73f39ced41f212773751 | p@chr22:23586671..23586679, + |
| 1.02e-36 | FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_e9bb9f13cb1fa959c779a9f9fda8834a | p1@ENST00000555639 |
| 1.02e-36 | FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_e9bb9f13cb1fa959c779a9f9fda8834a | p1@ENST00000555639 |
| 2.1e-35 | FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_23cf261d0084387ceee5652d74071970 | p2@PAX9 |
| 2.1e-35 | FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_23cf261d0084387ceee5652d74071970 | p2@PAX9 |
| 7.98e-34 | FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_dc85b6c70736ef20beae6110a125d92e | p1@ENST00000427892, p1@uc001dgp.1 |
| 7.98e-34 | FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_dc85b6c70736ef20beae6110a125d92e | p1@ENST00000427892, p1@uc001dgp.1 |
| 9.47e-34 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_e73158edb69a26ad4316a33dfac0b5d7 | p4@PAX9 |
| 9.47e-34 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_e73158edb69a26ad4316a33dfac0b5d7 | p4@PAX9 |
| 2.03e-33 | FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_6fe1bcab5e5433691b23bde493b2a144 | p@chr15:78817557..78817567, + |
| 2.03e-33 | FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_6fe1bcab5e5433691b23bde493b2a144 | p@chr15:78817557..78817567, + |
| 3.37e-33 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_3e262b263f50c19622b7fb283f21bf2e | p26@Myo18a |
| 3.37e-33 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_3e262b263f50c19622b7fb283f21bf2e | p26@Myo18a |
| 4.33e-33 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_f821cb26cc14b5999a63031ca07e39fc | p@chr2:32482372..32482381, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_f821cb26cc14b5999a63031ca07e39fc | p@chr8:75097542..75097549, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_f821cb26cc14b5999a63031ca07e39fc | p@chr9:21934585..21934591, - |
| 4.33e-33 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_f821cb26cc14b5999a63031ca07e39fc | p@chr2:32482372..32482381, + |
| 4.33e-33 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_f821cb26cc14b5999a63031ca07e39fc | p@chr9:21934585..21934591, - |
| 4.33e-33 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_f821cb26cc14b5999a63031ca07e39fc | p@chr8:75097542..75097549, + |
| 1.06e-32 | FFCP PHASE2:Hg19::chr14:37126852..37126863,+#_9613815bb4d008d44a393c3d57009a23 | p2@ENST00000555639 |
| 1.06e-32 | FFCP PHASE1:Hg19::chr14:37126852..37126863,+#_9613815bb4d008d44a393c3d57009a23 | p2@ENST00000555639 |
| 9.32e-32 | FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_174a3be3cca12d03010c7a2cbf115487 | p@chr1:75599683..75599699, - |
| 9.32e-32 | FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_174a3be3cca12d03010c7a2cbf115487 | p@chr1:75599683..75599699, - |
| 2.86e-31 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_c099c8202dff6b937d8165259cda9e12 | p@chr5:30104176..30104187, - |
| 2.86e-31 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_c099c8202dff6b937d8165259cda9e12 | p@chr5:30104176..30104187, - |
| 3.24e-31 | FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_6b8060986f2ce66781d7ef68a5a574f9 | p@chr1:75599672..75599682, - |
| 3.24e-31 | FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_6b8060986f2ce66781d7ef68a5a574f9 | p@chr1:75599672..75599682, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr1:16651649..16651655, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr13:58283583..58283607, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr4:63079735..63079745, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr15:85334335..85334353, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p1@Otog |
| 6.66e-30 | FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr4:63079735..63079745, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr17:13983179..13983190, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr11:8405038..8405048, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chrX:154140800..154140810, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr2:75320183..75320189, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr16:93971325..93971337, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Espnl |
| 6.66e-30 | FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr13:48087761..48087775, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr13:78257491..78257498, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr1:172843813..172843834, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p4@Kncn |
| 6.66e-30 | FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p5@Tecta |
| 6.66e-30 | FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr17:13983095..13983100, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p1@Otol1 |
| 6.66e-30 | FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr14:31283072..31283081, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr6:86745686..86745727, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Fscn2 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr3:154459246..154459253, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p1@Strc |
| 6.66e-30 | FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Otogl |
| 6.66e-30 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr15:89215306..89215315, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p4@uc007rhb.1 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr1:94627290..94627299, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr12:13572961..13572974, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr17:27252925..27252939, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Tectb |
| 6.66e-30 | FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p3@Strc |
| 6.66e-30 | FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr1:172843796..172843799, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p6@Fam70b |
| 6.66e-30 | FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr7:29733825..29733837, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr1:182528388..182528403, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr12:109905468..109905474, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr14:47293496..47293510, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr11:4689776..4689785, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Slc26a5 |
| 6.66e-30 | FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr1:94627290..94627299, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr15:58022966..58022995, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr13:58283583..58283607, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@uc007rhb.1 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p5@Fer1l6 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr15:103146966..103146971, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@9230102O04Rik |
| 6.66e-30 | FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr3:35012425..35012439, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr12:77084875..77084885, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr2:128881546..128881553, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p3@Ptprq |
| 6.66e-30 | FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr1:182528371..182528385, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr19:10536767..10536777, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p6@Tecta |
| 6.66e-30 | FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr6:113251606..113251613, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr9:41495920..41495928, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr10:108316802..108316807, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p11@Tecta |
| 6.66e-30 | FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr8:13425469..13425503, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p10@Otof |
| 6.66e-30 | FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr4:130461150..130461185, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr2:128881546..128881553, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr16:93971367..93971379, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Gm1322 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr5:3909310..3909321, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr19:10536797..10536802, - |
