UBERON:0000467: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:CARO_0000011-XAO_0003002-ZFA_0001439;;UBERON:FBbt_00004856-FBbt_00004969-FMA_7149-FMA_72979-MA_0000003-MA_0000014-MIAA_0000033-WBbt_0005730-XAO_0000176 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]." [CARO:0000011, CARO:MAH, Wikipedia:Organ_system] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000467 | |||
|is_a=UBERON:0000480 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=anatomical system | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000468 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[AAO]" xsd:string;;UBPROP:0000001 "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[CARO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[AAO]" xsd:string;;UBPROP:0000001 "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[CARO]" xsd:string | ||
| | |subset=uberon_slim;;upper_level | ||
| | |synonym="body system" EXACT [NIF_GrossAnatomy:birnlex_14];;"organ system" EXACT [];;"system" BROAD [GO:0048731] | ||
|union_of= | |||
|xref=AAO:0000007;;AEO:0000011;;BILA:0000011;;CARO:0000011;;EHDAA2:0001330;;EHDAA2:0003011;;EHDAA:392;;EMAPA:16103;;EV:0100000;;FBbt:00004856;;FMA:7149;;galen:AnatomicalSystem;;HAO:0000011;;MA:0000003;;ncithesaurus:Organ_System;;NIF_GrossAnatomy:birnlex_14;;OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ;;SCTID:278195005;;TAO:0001439;;TGMA:0001831;;WBbt:0005746;;XAO:0003002;;ZFA:0001439 | |||
}} | }} | ||
Latest revision as of 17:09, 12 September 2014
| Name: | anatomical system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]." [CARO:0000011, CARO:MAH, Wikipedia:Organ_system] | ||
| Xrefs: |
| ||
| Synonyms: |
"body system" EXACT [NIF_GrossAnatomy:birnlex_14] "organ system" EXACT [] "system" BROAD [GO:0048731] | ||
| Alt_id: |
UBERON:CARO_0000011-XAO_0003002-ZFA_0001439 UBERON:FBbt_00004856-FBbt_00004969-FMA_7149-FMA_72979-MA_0000003-MA_0000014-MIAA_0000033-WBbt_0005730-XAO_0000176 | ||
| Subset: |
uberon_slim upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000480(anatomical group) |
|---|---|
| part_of: | UBERON:0000468(multi-cellular organism) |
Children
| is a: | UBERON:0000383 (musculature of body),UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system),UBERON:0001016 (nervous system),UBERON:0001032 (sensory system),UBERON:0001033 (gustatory system),UBERON:0001434 (skeletal system),UBERON:0002193 (hemolymphoid system),UBERON:0002204 (musculoskeletal system),UBERON:0002294 (biliary system),UBERON:0002330 (exocrine system),UBERON:0002390 (hematopoietic system),UBERON:0002405 (immune system),UBERON:0002416 (integumental system),UBERON:0002423 (hepatobiliary system),UBERON:0003956 (aqueous drainage system),UBERON:0004122 (genitourinary system),UBERON:0004456 (entire sense organ system),UBERON:0004535 (cardiovascular system),UBERON:0004770 (articular system),UBERON:0005281 (ventricular system of central nervous system),UBERON:0005282 (ventricular system of brain),UBERON:0005409 (gastrointestinal system),UBERON:0006524 (alveolar system),UBERON:0007798 (vascular system) |
|---|---|
| part of: | UBERON:0000062 (organ),UBERON:0011216 (organ system subdivision) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000467 (anatomical system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[CARO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
