UBERON:0000966: Difference between revisions
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|located_in= | |located_in= | ||
|name=retina | |name=retina | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001802 | |part_of=UBERON:0001802 |
Latest revision as of 17:12, 12 September 2014
Name: | retina | |
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Namespace: | FANTOM | |
Definition: | "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator] | |
Xrefs: |
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Synonyms: |
"inner layer of eyeball" EXACT [] "Netzhaut" RELATED [BTO:0001175] "tunica interna of eyeball" EXACT [] | |
Comments: | Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods | |
Alt_id: | UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152 | |
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0005388(photoreceptor array) |
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develops_from: | UBERON:0003072(optic cup) |
part_of: | UBERON:0001802(posterior segment of eyeball) |
Children
is a: | FF:10440-106E8 () |
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derives from: | FF:0010030 (human retina - adult sample),FF:0102919 (retinoblastoma cell line sample) |
part of: | UBERON:0001781 (layer of retina),CL:0002585 (retinal blood vessel endothelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10440-106E8
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10671-109D5
- 10672-109D6
- 10673-109D7
- 10674-109D8
- 10675-109D9
- 10676-109E1
- 10677-109E2
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000966 (retina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.