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UBERON:0000966: Difference between revisions

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|located_in=
|located_in=
|name=retina
|name=retina
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001802
|part_of=UBERON:0001802

Latest revision as of 17:12, 12 September 2014

Name:retina
Namespace:FANTOM
Definition:"The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator]
Xrefs:
links:

AAO:0010352
BTO:0001175
EFO:0000832
EHDAA2:0001627
EHDAA:4757
EMAPA:17168
EV:0100348
FMA:58301
GAID:755
[ Human_eye_cross-sectional_view_grayscale.png Human_eye_cross-sectional_view_grayscale.png]
[ 200px-Human_eye_cross-sectional_view_grayscale.png 200px-Human_eye_cross-sectional_view_grayscale.png]
MA:0000276
MAT:0000142
MESH:A.09.371.729
MIAA:0000142
ncithesaurus:Retina
NIF_GrossAnatomy:birnlex_1153
NIF_GrossAnatomy:birnlex_1156
OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
SCTID:181171005
TAO:0000152
VHOG:0000229
XAO:0000009

ZFA:0000152
Synonyms: "inner layer of eyeball" EXACT []
"Netzhaut" RELATED [BTO:0001175]
"tunica interna of eyeball" EXACT []
Comments:Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods
Alt_id: UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005388(photoreceptor array)
develops_from:UBERON:0003072(optic cup)
part_of:UBERON:0001802(posterior segment of eyeball)



Children

is a:FF:10440-106E8 ()
derives from:FF:0010030 (human retina - adult sample),FF:0102919 (retinoblastoma cell line sample)
part of:UBERON:0001781 (layer of retina),CL:0002585 (retinal blood vessel endothelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000966 (retina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.