UBERON:0001255: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529 | ||
|anatomical_img_id=FMA:15900 | |||
| | |||
|comment=editor note: consider adding a 'bladder' grouping class | |comment=editor note: consider adding a 'bladder' grouping class | ||
|created_by= | |created_by= | ||
| | |def="Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra." [FMA:15900, Wikipedia:Urinary_bladder] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0000164 | |develops_from=UBERON:0000164 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001255 | |||
|is_a=UBERON:0000489 ;;UBERON:0002075 ;;UBERON:0004120 ;;UBERON:0006554 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON:0001556 | |name=urinary bladder | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001556 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string | ||
| | |subset=major_organ;;organ_slim;;uberon_slim | ||
| | |synonym="bladder" EXACT [];;"excretory canal" BROAD [];;"vesica urinaria" RELATED LATIN [Wikipedia:Urinary_bladder] | ||
|union_of= | |||
|xref=AAO:0000623;;BTO:0001418;;EFO:0000290;;EHDAA2:0000174;;EHDAA:9328;;EMAPA:18321;;EV:0100098;;FMA:15900;;GAID:0000004;;galen:UrinaryBladder;;http://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png;;MA:0000380;;MAT:0000122;;MESH:A.05.810.161;;MIAA:0000122;;ncithesaurus:Bladder;;OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA;;SCTID:302512001;;VHOG:0000740;;XAO:0000154 | |||
}} | }} |
Latest revision as of 17:17, 12 September 2014
Name: | urinary bladder | |
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Namespace: | FANTOM | |
Definition: | "Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra." [FMA:15900, Wikipedia:Urinary_bladder] | |
Xrefs: |
| |
Synonyms: |
"bladder" EXACT [] "excretory canal" BROAD [] "vesica urinaria" RELATED LATIN [Wikipedia:Urinary_bladder] | |
Comments: | editor note: consider adding a 'bladder' grouping class | |
Alt_id: | UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529 | |
Subset: |
major_organ organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000489(cavitated compound organ),UBERON:0002075(viscus),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure) |
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develops_from: | UBERON:0000164(primitive urogenital sinus) |
part_of: | UBERON:0001556(lower urinary tract) |
Children
derives from: | FF:0010011 (human bladder - adult sample),FF:0011437 (mouse urinary bladder- adult sample) |
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part of: | UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),CL:0002597 (smooth muscle cell of bladder),UBERON:0004645 (urinary bladder urothelium),CL:1001319 (bladder cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
- 11680-122H6
- 879-12E4 (urinary bladder, adult)
Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
- 11680-122H6
- 879-12E4 (urinary bladder, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001255 (urinary bladder), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.