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{{UBERON
{{UBERON
|id=UBERON:0003056
|alt_id=UBERON:XAO_0000045-ZFA_0007016
|name=pre-chordal neural plate
|namespace=
|def="The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator]
|xref=AAO:0011084;;VHOG:0001200;;XAO:0000045;;ZFA:0007016
|is_a=UBERON:0000479;;UBERON:0004121;;UBERON:0005291
|synonym="anterior neural plate" RELATED []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:XAO_0000045-ZFA_0007016
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003056
|is_a=UBERON:0004121 ;;UBERON:0005291
|is_obsolete=
|located_in=
|located_in=
|name=pre-chordal neural plate
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003075
|part_of=UBERON:0003075
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="anterior neural plate" RELATED []
|union_of=
|xref=AAO:0011084;;TAO:0007016;;VHOG:0001200;;XAO:0000045;;ZFA:0007016
}}
}}

Latest revision as of 17:35, 12 September 2014

Name:pre-chordal neural plate
Namespace:FANTOM
Definition:"The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator]
Xrefs:
links:

AAO:0011084
TAO:0007016
VHOG:0001200
XAO:0000045

ZFA:0007016
Synonyms: "anterior neural plate" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:XAO_0000045-ZFA_0007016

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue)
part_of:UBERON:0003075(neural plate)



Children

develops from:UBERON:0003071 (eye primordium),UBERON:0003080 (anterior neural tube)
part of:UBERON:0003071 (eye primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003056 (pre-chordal neural plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.29e-94FFCP PHASE2:Hg19::chr11:31839488..31839515,-#_20bdebb295e78d2d1523406849e2a515p3@PAX6
5.29e-94FFCP PHASE1:Hg19::chr11:31839488..31839515,-#_20bdebb295e78d2d1523406849e2a515p3@PAX6
7.01e-94FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_1e56a924019091ac15f91de095ab09f4p1@NR2E1
7.01e-94FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_1e56a924019091ac15f91de095ab09f4p1@NR2E1
5.34e-93FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_b73139ac7844d220f17c02c651957a65p@chr5:89977201..89977236, +
5.34e-93FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_b73139ac7844d220f17c02c651957a65p@chr5:89977201..89977236, +
6.98e-88FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_f15e4000ce79f40dc8c558f504aca029p5@ST8SIA3
6.98e-88FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_f15e4000ce79f40dc8c558f504aca029p5@ST8SIA3
8.41e-86FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_fd518c617ac6e7d2fcfa8831d5cbee73p5@PHACTR1
8.41e-86FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_fd518c617ac6e7d2fcfa8831d5cbee73p5@PHACTR1
7.05e-85FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_5f6f9ea38cbc740eb060417ed1b0bd6fp3@CTNND2
7.05e-85FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_5f6f9ea38cbc740eb060417ed1b0bd6fp3@CTNND2
1.35e-84FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_b9ac7047871f925b462c76f3c13d07d2p6@PSD
1.35e-84FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_b9ac7047871f925b462c76f3c13d07d2p6@PSD
1.37e-84FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_8d8e36cf030abcb64442a6fb5bb2d29ep3@PHACTR1
1.37e-84FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_8d8e36cf030abcb64442a6fb5bb2d29ep3@PHACTR1
4.78e-83FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_9ae421e39351816ec6cb03d7c154aafbp@chr20:61806320..61806344, +
4.78e-83FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_9ae421e39351816ec6cb03d7c154aafbp@chr20:61806320..61806344, +
7.13e-83FFCP PHASE2:Hg19::chr8:18541544..18541592,-#_6dee95eba72e031c600ea4a5c9f6b773p2@PSD3
7.13e-83FFCP PHASE1:Hg19::chr8:18541544..18541592,-#_6dee95eba72e031c600ea4a5c9f6b773p2@PSD3
7.19e-83FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_703d64242be40c631757a2c407203db4p10@GPM6B
7.19e-83FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_703d64242be40c631757a2c407203db4p10@GPM6B
1.73e-82FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_0bed3e7165d1c4b71321c3435bc8c4f1p6@GPM6B
1.73e-82FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_0bed3e7165d1c4b71321c3435bc8c4f1p6@GPM6B
2.68e-82FFCP PHASE2:Hg19::chr4:165305086..165305179,-#_fd0494280b0d8e3857ac54abb59ebf36p2@MARCH1
2.68e-82FFCP PHASE1:Hg19::chr4:165305086..165305179,-#_fd0494280b0d8e3857ac54abb59ebf36p2@MARCH1
1.94e-81FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_aed8a47fce010c48cf54ca1a37648d0fp2@FXYD7
1.94e-81FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_aed8a47fce010c48cf54ca1a37648d0fp2@FXYD7
3.84e-81FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_37ac19ff73fdc53dce2ac9f4a4ba301ap5@MKL2
3.84e-81FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_37ac19ff73fdc53dce2ac9f4a4ba301ap5@MKL2
5.89e-81FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_778fc0fc08ef950aeccefc584bc6ff44p9@GPM6B
5.89e-81FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_778fc0fc08ef950aeccefc584bc6ff44p9@GPM6B
1.07e-80FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_26d324ed94d5c398107f7154a2761f1dp4@ASTN1
1.07e-80FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_26d324ed94d5c398107f7154a2761f1dp4@ASTN1
6.2e-79FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_c5dea91f6317bf3567e27b1bdd4d032cp2@LMTK3
6.2e-79FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_c5dea91f6317bf3567e27b1bdd4d032cp2@LMTK3
2.83e-78FFCP PHASE2:Hg19::chr19:39006729..39006756,+#_2a2bb6d193d100a28b7c49e31bba2681p@chr19:39006729..39006756, +
2.83e-78FFCP PHASE1:Hg19::chr19:39006729..39006756,+#_2a2bb6d193d100a28b7c49e31bba2681p@chr19:39006729..39006756, +
4.61e-78FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_c04ada59ac84c96ccc448d5fe223f7f7p1@uc003ppd.1
4.61e-78FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_c04ada59ac84c96ccc448d5fe223f7f7p1@uc003ppd.1
7.82e-78FFCP PHASE2:Hg19::chr19:30016395..30016433,+#_2f494b1d3194ecb5b50f1364e1fdc382p@chr19:30016395..30016433, +
7.82e-78FFCP PHASE1:Hg19::chr19:30016395..30016433,+#_2f494b1d3194ecb5b50f1364e1fdc382p@chr19:30016395..30016433, +
7.99e-78FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_ee83ae304fdaa1cf7e56ac54443fd286p@chr4:6514469..6514483, -
7.99e-78FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_ee83ae304fdaa1cf7e56ac54443fd286p@chr4:6514469..6514483, -
9.92e-78FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_177525fecdcdf4f8fdeb8c5eca51a0c9p5@OPCML
9.92e-78FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_177525fecdcdf4f8fdeb8c5eca51a0c9p5@OPCML
1.06e-77FFCP PHASE1:Hg19::chr10:62149542..62149590,-#_a8f4028327a7ddc357f8395e47b0a49dp1@ANK3
1.06e-77FFCP PHASE2:Hg19::chr10:62149542..62149590,-#_a8f4028327a7ddc357f8395e47b0a49dp1@ANK3
1.12e-77FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_1d7388654be1e344f96f0807c057be9ap3@GRIN2B
1.12e-77FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_1d7388654be1e344f96f0807c057be9ap3@GRIN2B
3.17e-77FFCP PHASE1:Hg19::chr11:62475005..62475041,-#_6b0ca751a2da7b85503e09460992f65bp6@BSCL2
3.17e-77FFCP PHASE2:Hg19::chr11:62475005..62475041,-#_6b0ca751a2da7b85503e09460992f65bp6@BSCL2
4.8e-77FFCP PHASE2:Hg19::chr18:59000657..59000672,+#_dcd1ea3d0454820553c0da3e175ddfd1p1@CDH20
4.8e-77FFCP PHASE1:Hg19::chr18:59000657..59000672,+#_dcd1ea3d0454820553c0da3e175ddfd1p1@CDH20
4.84e-77FFCP PHASE1:Hg19::chr4:21792588..21792593,-#_bedca31051a9a1827bc0aa496c846562p@chr4:21792588..21792593, -
4.84e-77FFCP PHASE2:Hg19::chr4:21792588..21792593,-#_bedca31051a9a1827bc0aa496c846562p@chr4:21792588..21792593, -
5.21e-77FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_be0cedde9525106e8bb28e98192f9933p4@DLGAP3
5.21e-77FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_be0cedde9525106e8bb28e98192f9933p4@DLGAP3
7.45e-77FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_b9968d81d9342708654349ea70e47a2ep6@DPP6
7.45e-77FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_b9968d81d9342708654349ea70e47a2ep6@DPP6
8.33e-77FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_99416026f6c736c2b202189d9845c948p4@DPP6
8.33e-77FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_99416026f6c736c2b202189d9845c948p4@DPP6
1.48e-76FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_6ece1b19536ec13dcfa4af17c70da159p8@PHACTR1
1.48e-76FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_6ece1b19536ec13dcfa4af17c70da159p8@PHACTR1
1.66e-76FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_2202735e26e914b6f7cbf9611941d1aep4@PHACTR1
1.66e-76FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_2202735e26e914b6f7cbf9611941d1aep4@PHACTR1
1.7e-76FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_23ede77bd8ad33433c00188b770e899fp8@RIMS2
1.7e-76FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_23ede77bd8ad33433c00188b770e899fp8@RIMS2
1.84e-76FFCP PHASE1:Hg19::chr6:69942657..69942671,+#_5920093ba37f0c66efea414602e790d3p@chr6:69942657..69942671, +
1.84e-76FFCP PHASE2:Hg19::chr6:69942657..69942671,+#_5920093ba37f0c66efea414602e790d3p@chr6:69942657..69942671, +
1.89e-76FFCP PHASE1:Hg19::chr10:10504464..10504475,+#_673a187b9bc78863b88062bd402c749ap@chr10:10504464..10504475, +
1.89e-76FFCP PHASE2:Hg19::chr10:10504464..10504475,+#_673a187b9bc78863b88062bd402c749ap@chr10:10504464..10504475, +
2.63e-76FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_b53c750fc40bd97ae7685897d9d01cb3p8@LRRC7
2.63e-76FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_b53c750fc40bd97ae7685897d9d01cb3p8@LRRC7
2.68e-76FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_aaae87610dab2ca7eb9501da883aa0dep1@ENST00000412957
2.68e-76FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_aaae87610dab2ca7eb9501da883aa0dep1@ENST00000412957
4.52e-76FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_e5d86f354e5097c23ba0db2591c3a498p3@DOCK4
4.52e-76FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_e5d86f354e5097c23ba0db2591c3a498p3@DOCK4
4.91e-76FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_5ec0761f10b9928b32ea4b70ec8315e4p3@GPR98
4.91e-76FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_5ec0761f10b9928b32ea4b70ec8315e4p3@GPR98
6.45e-76FFCP PHASE1:Hg19::chr1:197237352..197237414,+#_8d03e8b3b07296bd1107db14836fcd93p2@CRB1
6.45e-76FFCP PHASE2:Hg19::chr1:197237352..197237414,+#_8d03e8b3b07296bd1107db14836fcd93p2@CRB1
7.05e-76FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_51089a543a6f08bf5bcf05434547e11fp2@DLGAP3
7.05e-76FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_51089a543a6f08bf5bcf05434547e11fp2@DLGAP3
1.25e-75FFCP PHASE2:Hg19::chr19:35631736..35631759,+#_d5f1acb7dd8455ae085c20a1aa144b9ap@chr19:35631736..35631759, +
1.25e-75FFCP PHASE1:Hg19::chr19:35631736..35631759,+#_d5f1acb7dd8455ae085c20a1aa144b9ap@chr19:35631736..35631759, +
1.68e-75FFCP PHASE1:Hg19::chr3:10749696..10749745,-#_bf55d68649fa5bb9d9328e417141e5eap3@ATP2B2
1.68e-75FFCP PHASE2:Hg19::chr3:10749696..10749745,-#_bf55d68649fa5bb9d9328e417141e5eap3@ATP2B2
2.61e-75FFCP PHASE1:Hg19::chr5:146435501..146435530,-#_9fff7a1688c66532d30bd692f9d943e7p3@PPP2R2B
2.61e-75FFCP PHASE2:Hg19::chr5:146435501..146435530,-#_9fff7a1688c66532d30bd692f9d943e7p3@PPP2R2B
3.3e-75FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_a74affec6b55c87c57b209ab59b2e9b7p3@NRXN1
3.3e-75FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_a74affec6b55c87c57b209ab59b2e9b7p3@NRXN1
4.65e-75FFCP PHASE2:Hg19::chr4:165304614..165304693,-#_bb22a9252a9f8553b2a38433b3f1fe4bp3@MARCH1
4.65e-75FFCP PHASE1:Hg19::chr4:165304614..165304693,-#_bb22a9252a9f8553b2a38433b3f1fe4bp3@MARCH1
5.31e-75FFCP PHASE2:Hg19::chr15:30261391..30261419,-#_86a72b8b0b19d0c8041d6a329f8a6003p14@TJP1
5.31e-75FFCP PHASE1:Hg19::chr15:30261391..30261419,-#_86a72b8b0b19d0c8041d6a329f8a6003p14@TJP1
5.33e-75FFCP PHASE1:Hg19::chr5:138210954..138210965,-#_71f801c1385c65b30a6d93317c80d7ecp4@LRRTM2
5.33e-75FFCP PHASE2:Hg19::chr5:138210954..138210965,-#_71f801c1385c65b30a6d93317c80d7ecp4@LRRTM2
6.62e-75FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_847d5fcc21f473690d446edc46cb36d2p2@NAALAD2
6.62e-75FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_847d5fcc21f473690d446edc46cb36d2p2@NAALAD2

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