FFCP PHASE1:Hg19::chr10:105796014..105796053,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:105796014..105796053,- | |||
|coexpression_cluster_id=C458 | |coexpression_cluster_id=C458 | ||
|description=CAGE_peak_at_chr10:105796014..105796053,- | |description=CAGE_peak_at_chr10:105796014..105796053,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002076!2.08e-16!43;CL:0002251!5.34e-16!21;CL:0000066!7.74e-16!254;CL:0000223!9.84e-14!59 | |ontology_enrichment_celltype=CL:0002076!2.08e-16!43;CL:0002251!5.34e-16!21;CL:0000066!7.74e-16!254;CL:0000223!9.84e-14!59 | ||
|ontology_enrichment_celltype_v019=CL:0002251;5.67e-16;20!CL:0002076;4.14e-14;42!CL:0002623;2.11e-12;3!CL:0000349;5.72e-08;19!CL:0000622;1.41e-07;5 | |ontology_enrichment_celltype_v019=CL:0002251;5.67e-16;20!CL:0002076;4.14e-14;42!CL:0002623;2.11e-12;3!CL:0000349;5.72e-08;19!CL:0000622;1.41e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002251,5.32e-16,20;CL:0002076,1.85e-15,42;CL:0000066,2.22e-14,253;CL:0002623,2.12e-12,3;CL:0000223,1.05e-11,58;CL:0000076,1.70e-10,63;CL:0000349,5.44e-08,19;CL:0000622,1.41e-07,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1749!1.00e-18!14;DOID:305!3.10e-11!106;DOID:0050687!1.05e-07!143 | |ontology_enrichment_disease=DOID:1749!1.00e-18!14;DOID:305!3.10e-11!106;DOID:0050687!1.05e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.22e-33;14 | |ontology_enrichment_disease_v019=DOID:1749;1.22e-33;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,6.30e-34,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.39e-19!169;UBERON:0000925!2.39e-19!169;UBERON:0006595!2.39e-19!169;UBERON:0001007!2.97e-13!155;UBERON:0001555!2.97e-13!155;UBERON:0007026!2.97e-13!155;UBERON:0004921!6.31e-11!129;UBERON:0004185!6.31e-11!129;UBERON:0001004!6.74e-11!72;UBERON:0000166!2.18e-10!21;UBERON:0000077!9.88e-10!130;UBERON:0000161!2.07e-09!35;UBERON:0005631!2.14e-08!14;UBERON:0000158!2.14e-08!14;UBERON:0000165!4.67e-08!28;UBERON:0000930!4.67e-08!28;UBERON:0003729!1.20e-07!5;UBERON:0001041!5.02e-07!98;UBERON:0003124!6.56e-07!7 | |ontology_enrichment_uberon=UBERON:0004119!2.39e-19!169;UBERON:0000925!2.39e-19!169;UBERON:0006595!2.39e-19!169;UBERON:0001007!2.97e-13!155;UBERON:0001555!2.97e-13!155;UBERON:0007026!2.97e-13!155;UBERON:0004921!6.31e-11!129;UBERON:0004185!6.31e-11!129;UBERON:0001004!6.74e-11!72;UBERON:0000166!2.18e-10!21;UBERON:0000077!9.88e-10!130;UBERON:0000161!2.07e-09!35;UBERON:0005631!2.14e-08!14;UBERON:0000158!2.14e-08!14;UBERON:0000165!4.67e-08!28;UBERON:0000930!4.67e-08!28;UBERON:0003729!1.20e-07!5;UBERON:0001041!5.02e-07!98;UBERON:0003124!6.56e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000165;9.09e-11;28!UBERON:0000161;9.93e-11;19!UBERON:0000166;9.93e-11;19!UBERON:0003729;5.88e-09;13!UBERON:0005631;1.15e-08;10!UBERON:0000158;1.15e-08;10!UBERON:0003343;4.01e-08;4!UBERON:0004785;4.01e-08;4!UBERON:0000478;6.35e-08;24!UBERON:0000344;2.05e-07;20!UBERON:0000486;9.06e-07;12 | |ontology_enrichment_uberon_v019=UBERON:0000165;9.09e-11;28!UBERON:0000161;9.93e-11;19!UBERON:0000166;9.93e-11;19!UBERON:0003729;5.88e-09;13!UBERON:0005631;1.15e-08;10!UBERON:0000158;1.15e-08;10!UBERON:0003343;4.01e-08;4!UBERON:0004785;4.01e-08;4!UBERON:0000478;6.35e-08;24!UBERON:0000344;2.05e-07;20!UBERON:0000486;9.06e-07;12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,1.90e-11,22;UBERON:0000161,1.98e-11,36;UBERON:0005631,3.32e-11,14;UBERON:0000158,3.32e-11,14;UBERON:0000165,2.52e-10,29;UBERON:0000930,2.52e-10,29;UBERON:0003729,5.59e-09,13;UBERON:0004119,8.45e-09,160;UBERON:0000925,8.45e-09,160;UBERON:0006595,8.45e-09,160;UBERON:0003343,3.08e-08,4;UBERON:0004785,3.08e-08,4;UBERON:0003102,4.24e-08,99;UBERON:0003124,4.58e-08,7;UBERON:0000478,6.10e-08,24;UBERON:0000344,2.21e-07,20;UBERON:0004923,5.65e-07,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.09220686065086,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0.639337125799041,0,0,0,0.580418477257168,0,1.24564449799115,0,0,0,0,0.368277635987565,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.57978255948989,3.27295344709002,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0.441463099414651,0.245976877086227,0.343135620597051,2.41450627898976,0,26.7407066614938,5.64789515467031,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,3.86358894857377,0.992425680696705,7.9707085205535,9.30028603244678,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714889968290738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90419561572865,3.09315525111078,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,1.66435439510497,1.81434175997808,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,2.6065841139427,4.41988746892302,0,0,0,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,2.14870389969272,0.576570202095319,12.888883961953,1.11273558941105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.188287601553558,0.86101074534246,1.68471475667626,0,2.98640420269047,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0.121360521749513,0,0.852408440419239,5.01363417949149,0,3.68592842519078,0,0,0,0,8.86726714137573,0,0,0,3.47713520507326,0,0,2.06697207638852,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,2.38966241399549,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,6.83176346965156,0.230850775511391,0,0,0.269272933229316,0,2.23300811812344,0,4.26427820814908,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.442287822516696,1.22206028986725,0,0.123563938946503,0,0.067401132980677,0,0,0,1.36965233252463,0.971121518136371,0,0,0,0,0,0,0,0,0,0,0,0,0,4.50765028106137,6.7906181132714,0,0.51595809741485,0,0,0,0.387956065953678,0,0.225980740780532,0.137041924646751,0,0,1.75996244461323,0.0801588202515337,0,0.599428828746391,0.864542502924636,0,0,0.432164393964449,0,2.35694034616795,0,0.104602846312333,0,0,0,0,0,0,0,0,0.458320848023367,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,1.5476039091159,0,2.34804281319486,0,0,0,0,1.72723677587501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,9.57511886655273,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0.37494122388632,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0.337884881306145,0,0,0,0.138258436151731,0.194860308839388,0.132864840313363,0,0,0,0,0,0,0,0,0,0.139879507719444,1.24415452006595,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76665893301846,1.53360640352062,3.4851433719119,0.808679663052368,0,0,0,0,0,0,0.261906694481422,0.163771917510097,1.33070477595341,0,0,0,0,0,0,0.992422356778588,0,0.511049710558381,0,0,0,0,0.532214220975833,0,0,0,0,0.118193840883968,0,0.078493092850514,0,0.560544326627578,0.913158720509496,0,0,0,0,0,0,0,35.2267479077163,39.4359682087024,17.2814915453523,0.860454717640555,0,0,0.846774100381858,0,0,0,0,0.687051635306701,0.121917924982269,0,0,0,1.45713297917742,0,0,0.118920090777569,0.22589216407792,0.109940516745429,0.150962843566674,0.617393264863557,0.437119121007915,0,0,0,0,0,0.4226557275834,0,0,0.0644578879735772,0,1.60698544745092,5.29342307573538,0.320965466756673,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.407955318967927,0.534434810531121,0.18378979906969,0,0,1.60778478093707,0,0,0.639701945702943,0,0.0645889098360061,1.11734485732544,0,0,0,2.17716747896961,0.342233301085281,0.5388164241167,0.286888821570705,0.99798106963804,1.05824249194267,0,0,0.628776414746108,2.34640942403454,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.09220686065086,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0.639337125799041,0,0,0,0.580418477257168,0,1.24564449799115,0,0,0,0,0.368277635987565,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.57978255948989,3.27295344709002,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0.441463099414651,0.245976877086227,0.343135620597051,2.41450627898976,0,26.7407066614938,5.64789515467031,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,3.86358894857377,0.992425680696705,7.9707085205535,9.30028603244678,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714889968290738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90419561572865,3.09315525111078,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,1.66435439510497,1.81434175997808,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,2.6065841139427,4.41988746892302,0,0,0,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,2.14870389969272,0.576570202095319,12.888883961953,1.11273558941105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.188287601553558,0.86101074534246,1.68471475667626,0,2.98640420269047,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0.121360521749513,0,0.852408440419239,5.01363417949149,0,3.68592842519078,0,0,0,0,8.86726714137573,0,0,0,3.47713520507326,0,0,2.06697207638852,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,2.38966241399549,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,6.83176346965156,0.230850775511391,0,0,0.269272933229316,0,2.23300811812344,0,4.26427820814908,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.442287822516696,1.22206028986725,0,0.123563938946503,0,0.067401132980677,0,0,0,1.36965233252463,0.971121518136371,0,0,0,0,0,0,0,0,0,0,0,0,0,4.50765028106137,6.7906181132714,0,0.51595809741485,0,0,0,0.387956065953678,0,0.225980740780532,0.137041924646751,0,0,1.75996244461323,0.0801588202515337,0,0.599428828746391,0.864542502924636,0,0,0.432164393964449,0,2.35694034616795,0,0.104602846312333,0,0,0,0,0,0,0,0,0.458320848023367,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,1.5476039091159,0,2.34804281319486,0,0,0,0,1.72723677587501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,9.57511886655273,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0.37494122388632,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0.337884881306145,0,0,0,0.138258436151731,0.194860308839388,0.132864840313363,0,0,0,0,0,0,0,0,0,0.139879507719444,1.24415452006595,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76665893301846,1.53360640352062,3.4851433719119,0.808679663052368,0,0,0,0,0,0,0.261906694481422,0.163771917510097,1.33070477595341,0,0,0,0,0,0,0.992422356778588,0,0.511049710558381,0,0,0,0,0.532214220975833,0,0,0,0,0.118193840883968,0,0.078493092850514,0,0.560544326627578,0.913158720509496,0,0,0,0,0,0,0,35.2267479077163,39.4359682087024,17.2814915453523,0.860454717640555,0,0,0.846774100381858,0,0,0,0,0.687051635306701,0.121917924982269,0,0,0,1.45713297917742,0,0,0.118920090777569,0.22589216407792,0.109940516745429,0.150962843566674,0.617393264863557,0.437119121007915,0,0,0,0,0,0.4226557275834,0,0,0.0644578879735772,0,1.60698544745092,5.29342307573538,0.320965466756673,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.407955318967927,0.534434810531121,0.18378979906969,0,0,1.60778478093707,0,0,0.639701945702943,0,0.0645889098360061,1.11734485732544,0,0,0,2.17716747896961,0.342233301085281,0.5388164241167,0.286888821570705,0.99798106963804,1.05824249194267,0,0,0.628776414746108,2.34640942403454,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr10:105796014..105796053,- | |short_description=p@chr10:105796014..105796053,- | ||
}} | }} |
Latest revision as of 10:04, 23 July 2015
Short description: | p@chr10:105796014..105796053, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:105796014..105796053, - |
Coexpression cluster: | C458_salivary_parietal_middle_locus_medial_occipital_globus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 5.32e-16 | 20 |
endo-epithelial cell | 1.85e-15 | 42 |
epithelial cell | 2.22e-14 | 253 |
acinar cell of salivary gland | 2.12e-12 | 3 |
endodermal cell | 1.05e-11 | 58 |
squamous epithelial cell | 1.70e-10 | 63 |
extraembryonic cell | 5.44e-08 | 19 |
acinar cell | 1.41e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
oral opening | 1.90e-11 | 22 |
orifice | 1.98e-11 | 36 |
extraembryonic membrane | 3.32e-11 | 14 |
membranous layer | 3.32e-11 | 14 |
mouth | 2.52e-10 | 29 |
stomodeum | 2.52e-10 | 29 |
mouth mucosa | 5.59e-09 | 13 |
endoderm-derived structure | 8.45e-09 | 160 |
endoderm | 8.45e-09 | 160 |
presumptive endoderm | 8.45e-09 | 160 |
mucosa of oral region | 3.08e-08 | 4 |
respiratory system mucosa | 3.08e-08 | 4 |
surface structure | 4.24e-08 | 99 |
chorion | 4.58e-08 | 7 |
extraembryonic structure | 6.10e-08 | 24 |
mucosa | 2.21e-07 | 20 |
organ component layer | 5.65e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.30e-34 | 14 |