FFCP PHASE1:Hg19::chr11:2150745..2150785,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-240bp_to_BC127839_5end | |association_with_transcript=-240bp_to_BC127839_5end | ||
|cluster_id=chr11:2150745..2150785,+ | |||
|coexpression_cluster_id=C172 | |||
|description=CAGE_peak_1_at_BC127839_5end | |description=CAGE_peak_1_at_BC127839_5end | ||
|id=chr11:2150745..2150785,+ | |id=chr11:2150745..2150785,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000349;2.75e-26;19!CL:0002536;1.45e-11;2!CL:0002575;3.78e-11;2!CL:0002537;2.38e-10;5!CL:0000182;2.81e-10;12!CL:0002541;2.76e-08;3!CL:0002577;6.45e-08;3!CL:0002564;2.19e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.54e-26,19;CL:0002536,1.45e-11,2;CL:0002575,2.44e-11,2;CL:0002537,2.38e-10,5;CL:0000182,2.81e-10,12;CL:0002541,2.76e-08,3;CL:0002577,5.73e-08,3;CL:0002564,3.14e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.61e-11;11!UBERON:0009497;2.52e-09;13 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.28e-17!14;UBERON:0000158!1.28e-17!14;UBERON:0000478!1.83e-12!24;UBERON:0003124!1.22e-09!7;UBERON:0000305!1.28e-09!7;UBERON:0003929!8.50e-09!54;UBERON:0005284!2.61e-08!5;UBERON:0004871!2.82e-08!8;UBERON:0002107!2.22e-07!19;UBERON:0006925!2.22e-07!19;UBERON:0008836!2.22e-07!19;UBERON:0005256!2.22e-07!143;UBERON:0004119!4.19e-07!169;UBERON:0000925!4.19e-07!169;UBERON:0006595!4.19e-07!169;UBERON:0000490!6.70e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;2.49e-29;24!UBERON:0005631;1.30e-25;10!UBERON:0000158;1.30e-25;10!UBERON:0000305;4.95e-19;7!UBERON:0001987;2.84e-12;4!UBERON:0002107;6.57e-09;19!UBERON:0006925;6.57e-09;19!UBERON:0003124;2.76e-08;3!UBERON:0000920;2.76e-08;3!UBERON:0002242;2.19e-07;3!UBERON:0002426;9.54e-07;1!UBERON:0003831;9.54e-07;1!UBERON:0003898;9.54e-07;1!UBERON:0004830;9.54e-07;1!UBERON:0003830;9.54e-07;1!UBERON:0005175;9.54e-07;1!UBERON:0001774;9.54e-07;1!UBERON:0001103;9.54e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.67e-36,14;UBERON:0000158,2.67e-36,14;UBERON:0000478,2.15e-29,24;UBERON:0000305,4.97e-19,7;UBERON:0003124,6.42e-19,7;UBERON:0004871,1.28e-16,8;UBERON:0001987,2.26e-12,4;UBERON:0004340,2.26e-12,4;UBERON:0002107,6.97e-09,19;UBERON:0006925,6.97e-09,19;UBERON:0008836,6.97e-09,19;UBERON:0000920,2.76e-08,3;UBERON:0008835,1.36e-07,22;UBERON:0003894,1.36e-07,22;UBERON:0004923,1.57e-07,66;UBERON:0009854,3.09e-07,23;UBERON:0002242,3.14e-07,3;UBERON:0003068,3.14e-07,3;UBERON:0002328,3.14e-07,3;UBERON:0004880,3.14e-07,3;UBERON:0002426,9.81e-07,1;UBERON:0003831,9.81e-07,1;UBERON:0003898,9.81e-07,1;UBERON:0004830,9.81e-07,1;UBERON:0003830,9.81e-07,1;UBERON:0005175,9.81e-07,1;UBERON:0001774,9.81e-07,1;UBERON:0001103,9.81e-07,1;UBERON:0010084,9.81e-07,1 | |||
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| ||
|short_description=p1@BC127839 | |short_description=p1@BC127839 | ||
}} | }} |
Latest revision as of 20:59, 23 July 2015
Short description: | p1@BC127839 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BC127839_5end |
Coexpression cluster: | C172_chorionic_skeletal_tongue_amniotic_liver_gastrointestinal_Pericytes |
Association with transcript: | -240bp_to_BC127839_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.54e-26 | 19 |
amniotic epithelial cell | 1.45e-11 | 2 |
central nervous system pericyte | 2.44e-11 | 2 |
amnion mesenchymal stem cell | 2.38e-10 | 5 |
hepatocyte | 2.81e-10 | 12 |
chorionic membrane mesenchymal stem cell | 2.76e-08 | 3 |
placental epithelial cell | 5.73e-08 | 3 |
nucleus pulposus cell of intervertebral disc | 3.14e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.67e-36 | 14 |
membranous layer | 2.67e-36 | 14 |
extraembryonic structure | 2.15e-29 | 24 |
amnion | 4.97e-19 | 7 |
chorion | 6.42e-19 | 7 |
somatic layer of lateral plate mesoderm | 1.28e-16 | 8 |
placenta | 2.26e-12 | 4 |
allantois | 2.26e-12 | 4 |
liver | 6.97e-09 | 19 |
digestive gland | 6.97e-09 | 19 |
liver bud | 6.97e-09 | 19 |
egg chorion | 2.76e-08 | 3 |
hepatic diverticulum | 1.36e-07 | 22 |
liver primordium | 1.36e-07 | 22 |
organ component layer | 1.57e-07 | 66 |
digestive tract diverticulum | 3.09e-07 | 23 |
nucleus pulposus | 3.14e-07 | 3 |
axial mesoderm | 3.14e-07 | 3 |
notochord | 3.14e-07 | 3 |
chordamesoderm | 3.14e-07 | 3 |
chest muscle | 9.81e-07 | 1 |
respiratory system muscle | 9.81e-07 | 1 |
skeletal muscle of trunk | 9.81e-07 | 1 |
respiratory system skeletal muscle | 9.81e-07 | 1 |
thoracic segment muscle | 9.81e-07 | 1 |
chest organ | 9.81e-07 | 1 |
muscle of trunk | 9.81e-07 | 1 |
diaphragm | 9.81e-07 | 1 |
future diaphragm | 9.81e-07 | 1 |