FFCP PHASE1:Hg19::chr12:52908434..52908443,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52908434..52908443,- | |||
|coexpression_cluster_id=C405 | |coexpression_cluster_id=C405 | ||
|description=CAGE_peak_at_chr12:52908434..52908443,- | |description=CAGE_peak_at_chr12:52908434..52908443,- | ||
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|ontology_enrichment_celltype=CL:0002076!3.80e-35!43;CL:0002251!3.77e-29!21;CL:0000223!3.50e-24!59;CL:0000066!7.79e-16!254;CL:0002368!8.07e-14!13;CL:0002621!2.52e-13!3;CL:0000349!4.64e-13!3;CL:0002577!4.64e-13!3;CL:0002623!1.42e-12!3;CL:0000076!7.24e-11!62;CL:0000575!3.34e-09!2;CL:0000622!1.03e-07!5;CL:0000240!5.16e-07!6;CL:0000311!5.16e-07!6;CL:0000079!5.16e-07!6;CL:0000237!5.16e-07!6;CL:0000036!5.16e-07!6;CL:0000357!5.16e-07!6;CL:0000114!5.16e-07!6 | |ontology_enrichment_celltype=CL:0002076!3.80e-35!43;CL:0002251!3.77e-29!21;CL:0000223!3.50e-24!59;CL:0000066!7.79e-16!254;CL:0002368!8.07e-14!13;CL:0002621!2.52e-13!3;CL:0000349!4.64e-13!3;CL:0002577!4.64e-13!3;CL:0002623!1.42e-12!3;CL:0000076!7.24e-11!62;CL:0000575!3.34e-09!2;CL:0000622!1.03e-07!5;CL:0000240!5.16e-07!6;CL:0000311!5.16e-07!6;CL:0000079!5.16e-07!6;CL:0000237!5.16e-07!6;CL:0000036!5.16e-07!6;CL:0000357!5.16e-07!6;CL:0000114!5.16e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000240;7.52e-24;6!CL:0000311;7.52e-24;6!CL:0000079;7.52e-24;6!CL:0000237;7.52e-24;6!CL:0002621;1.86e-21;3!CL:0002577;3.27e-21;3!CL:0002336;5.52e-17;1!CL:0002261;5.52e-17;1!CL:0002170;5.52e-17;1!CL:0002252;1.53e-16;1!CL:0000312;2.44e-13;5!CL:0002251;1.24e-12;20!CL:0002159;1.67e-10;14!CL:0000575;6.17e-09;2!CL:0002076;1.84e-08;42!CL:0000362;8.17e-08;9 | |ontology_enrichment_celltype_v019=CL:0000240;7.52e-24;6!CL:0000311;7.52e-24;6!CL:0000079;7.52e-24;6!CL:0000237;7.52e-24;6!CL:0002621;1.86e-21;3!CL:0002577;3.27e-21;3!CL:0002336;5.52e-17;1!CL:0002261;5.52e-17;1!CL:0002170;5.52e-17;1!CL:0002252;1.53e-16;1!CL:0000312;2.44e-13;5!CL:0002251;1.24e-12;20!CL:0002159;1.67e-10;14!CL:0000575;6.17e-09;2!CL:0002076;1.84e-08;42!CL:0000362;8.17e-08;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000240,7.24e-24,6;CL:0000311,7.24e-24,6;CL:0000079,7.24e-24,6;CL:0000237,7.24e-24,6;CL:0000036,7.24e-24,6;CL:0000357,7.24e-24,6;CL:0000114,7.24e-24,6;CL:0002621,1.59e-21,3;CL:0002577,2.67e-21,3;CL:0002336,5.53e-17,1;CL:0002261,5.53e-17,1;CL:0002170,5.53e-17,1;CL:0002252,1.65e-16,1;CL:0000312,2.37e-13,5;CL:0002251,1.20e-12,20;CL:0002159,1.52e-10,14;CL:0002076,3.36e-09,42;CL:0000575,5.08e-09,2;CL:0000362,8.03e-08,9 | |||
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|ontology_enrichment_disease=DOID:1749!1.59e-25!14 | |ontology_enrichment_disease=DOID:1749!1.59e-25!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;1.53e-16;1!DOID:3149;1.53e-16;1!DOID:3451;6.17e-09;2!DOID:4159;6.17e-09;2!DOID:0060122;6.17e-09;2 | |ontology_enrichment_disease_v019=DOID:3151;1.53e-16;1!DOID:3149;1.53e-16;1!DOID:3451;6.17e-09;2!DOID:4159;6.17e-09;2!DOID:0060122;6.17e-09;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3151,3.07e-16,1;DOID:3149,3.07e-16,1;DOID:3451,8.74e-09,2;DOID:4159,8.74e-09,2;DOID:0060122,8.74e-09,2 | |||
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| ||
|short_description=p@chr12:52908434..52908443,- | |short_description=p@chr12:52908434..52908443,- | ||
}} | }} |
Latest revision as of 09:34, 24 July 2015
Short description: | p@chr12:52908434..52908443, - |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52908434..52908443, - |
Coexpression cluster: | C405_Keratinocyte_Mammary_Sebocyte_tongue_Corneal_Mallassezderived_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelial cell | 7.24e-24 | 6 |
keratin accumulating cell | 7.24e-24 | 6 |
stratified epithelial cell | 7.24e-24 | 6 |
keratinizing barrier epithelial cell | 7.24e-24 | 6 |
epithelial fate stem cell | 7.24e-24 | 6 |
stratified epithelial stem cell | 7.24e-24 | 6 |
surface ectodermal cell | 7.24e-24 | 6 |
gingival epithelial cell | 1.59e-21 | 3 |
placental epithelial cell | 2.67e-21 | 3 |
buccal mucosa cell | 5.53e-17 | 1 |
endothelial cell of viscerocranial mucosa | 5.53e-17 | 1 |
keratinized cell of the oral mucosa | 5.53e-17 | 1 |
epithelial cell of esophagus | 1.65e-16 | 1 |
keratinocyte | 2.37e-13 | 5 |
epithelial cell of alimentary canal | 1.20e-12 | 20 |
general ecto-epithelial cell | 1.52e-10 | 14 |
endo-epithelial cell | 3.36e-09 | 42 |
corneal epithelial cell | 5.08e-09 | 2 |
epidermal cell | 8.03e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.59e-21 | 3 |
placenta | 3.07e-16 | 4 |
allantois | 3.07e-16 | 4 |
mouth mucosa | 2.34e-11 | 13 |
chorion | 1.09e-09 | 7 |
surface structure | 2.89e-09 | 99 |
mouth | 8.84e-09 | 29 |
stomodeum | 8.84e-09 | 29 |
epithelium of mucosa | 1.13e-08 | 8 |
gingiva | 1.13e-08 | 8 |
subdivision of head | 7.46e-08 | 49 |
mucosa | 1.42e-07 | 20 |
head | 7.28e-07 | 56 |
oral opening | 7.63e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 3.07e-16 | 1 |
keratoacanthoma | 3.07e-16 | 1 |
skin carcinoma | 8.74e-09 | 2 |
skin cancer | 8.74e-09 | 2 |
integumentary system cancer | 8.74e-09 | 2 |