FFCP PHASE1:Hg19::chr16:4431722..4431771,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:4431722..4431771,+ | |||
|coexpression_cluster_id=C1421 | |coexpression_cluster_id=C1421 | ||
|description=CAGE_peak_at_chr16:4431722..4431771,+ | |description=CAGE_peak_at_chr16:4431722..4431771,+ | ||
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|ontology_enrichment_celltype=CL:0000055!2.23e-27!180;CL:0000057!3.04e-21!75;CL:0000183!9.69e-10!59;CL:0002334!1.38e-09!12;CL:0000680!2.68e-09!57;CL:0000056!2.68e-09!57;CL:0000355!2.68e-09!57;CL:0002620!8.10e-09!23;CL:0000187!1.29e-08!54;CL:0000499!3.95e-08!27;CL:0000393!6.28e-07!60;CL:0000211!6.28e-07!60 | |ontology_enrichment_celltype=CL:0000055!2.23e-27!180;CL:0000057!3.04e-21!75;CL:0000183!9.69e-10!59;CL:0002334!1.38e-09!12;CL:0000680!2.68e-09!57;CL:0000056!2.68e-09!57;CL:0000355!2.68e-09!57;CL:0002620!8.10e-09!23;CL:0000187!1.29e-08!54;CL:0000499!3.95e-08!27;CL:0000393!6.28e-07!60;CL:0000211!6.28e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0002334;3.85e-18;12!CL:0002620;3.68e-13;23!CL:0000499;1.89e-09;28!CL:0000057;2.83e-09;73!CL:0002320;4.52e-09;188!CL:0000136;4.90e-09;13!CL:0000134;9.62e-07;55 | |ontology_enrichment_celltype_v019=CL:0002334;3.85e-18;12!CL:0002620;3.68e-13;23!CL:0000499;1.89e-09;28!CL:0000057;2.83e-09;73!CL:0002320;4.52e-09;188!CL:0000136;4.90e-09;13!CL:0000134;9.62e-07;55 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.54e-25,76;CL:0002334,4.52e-18,12;CL:0000048,1.31e-16,427;CL:0000723,5.51e-16,433;CL:0000034,3.49e-15,441;CL:0002320,5.37e-15,361;CL:0000134,1.83e-13,354;CL:0002620,3.76e-13,23;CL:0000136,2.00e-11,15;CL:0000219,2.84e-10,386;CL:0000499,1.17e-09,28 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.98e-12!143;UBERON:0000475!3.03e-12!365;UBERON:0000914!2.62e-11!83;UBERON:0002329!2.62e-11!83;UBERON:0003077!2.62e-11!83;UBERON:0003059!2.62e-11!83;UBERON:0007282!2.62e-11!83;UBERON:0009618!2.62e-11!83;UBERON:0007285!2.62e-11!83;UBERON:0002100!5.71e-11!216;UBERON:0003102!9.12e-11!95;UBERON:0004290!7.08e-10!70;UBERON:0001134!8.59e-10!61;UBERON:0002036!8.59e-10!61;UBERON:0003082!8.59e-10!61;UBERON:0002385!2.09e-09!63;UBERON:0001015!2.09e-09!63;UBERON:0000383!2.09e-09!63;UBERON:0004923!5.33e-09!57;UBERON:0002199!3.89e-08!45;UBERON:0002416!3.89e-08!45;UBERON:0000486!7.05e-08!82;UBERON:0003104!3.20e-07!238;UBERON:0009142!3.20e-07!238 | |ontology_enrichment_uberon=UBERON:0005256!1.98e-12!143;UBERON:0000475!3.03e-12!365;UBERON:0000914!2.62e-11!83;UBERON:0002329!2.62e-11!83;UBERON:0003077!2.62e-11!83;UBERON:0003059!2.62e-11!83;UBERON:0007282!2.62e-11!83;UBERON:0009618!2.62e-11!83;UBERON:0007285!2.62e-11!83;UBERON:0002100!5.71e-11!216;UBERON:0003102!9.12e-11!95;UBERON:0004290!7.08e-10!70;UBERON:0001134!8.59e-10!61;UBERON:0002036!8.59e-10!61;UBERON:0003082!8.59e-10!61;UBERON:0002385!2.09e-09!63;UBERON:0001015!2.09e-09!63;UBERON:0000383!2.09e-09!63;UBERON:0004923!5.33e-09!57;UBERON:0002199!3.89e-08!45;UBERON:0002416!3.89e-08!45;UBERON:0000486!7.05e-08!82;UBERON:0003104!3.20e-07!238;UBERON:0009142!3.20e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;7.12e-12;9!UBERON:0000042;7.12e-12;9!UBERON:0001013;7.48e-12;14!UBERON:0003688;1.85e-10;6!UBERON:0002358;1.85e-10;6!UBERON:0003684;1.85e-10;6!UBERON:0001178;1.85e-10;6!UBERON:0002384;1.49e-08;198!UBERON:0002072;1.57e-08;5!UBERON:0002199;1.85e-08;46!UBERON:0002416;1.85e-08;46 | |ontology_enrichment_uberon_v019=UBERON:0004457;7.12e-12;9!UBERON:0000042;7.12e-12;9!UBERON:0001013;7.48e-12;14!UBERON:0003688;1.85e-10;6!UBERON:0002358;1.85e-10;6!UBERON:0003684;1.85e-10;6!UBERON:0001178;1.85e-10;6!UBERON:0002384;1.49e-08;198!UBERON:0002072;1.57e-08;5!UBERON:0002199;1.85e-08;46!UBERON:0002416;1.85e-08;46 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,4.22e-15,371;UBERON:0002199,4.57e-13,46;UBERON:0002416,4.57e-13,46;UBERON:0001013,7.25e-12,14;UBERON:0003688,2.45e-10,6;UBERON:0002358,2.45e-10,6;UBERON:0003684,2.45e-10,6;UBERON:0001178,2.45e-10,6;UBERON:0003102,1.06e-09,99;UBERON:0002097,1.32e-08,41;UBERON:0002072,1.43e-08,5;UBERON:0004457,2.29e-08,12;UBERON:0000042,2.29e-08,12;UBERON:0004923,4.68e-07,66 | |||
|phase1_expression=2.36181893051724,3.42560838225573,2.96004248601539,2.00146596706261,4.02264984984559,2.61701557230111,5.06599756336621,3.15859936713415,1.82829939739887,0,0.697801167972428,0,0.527533956456907,1.11389717664042,0.331397375727916,0,0,0.730310090387373,0.975865597581014,0.369363174230364,0.816002764977012,0,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.68280343881454,0.255725123687061,1.80719576192283,1.50401373190767,5.21447468258965,1.5905718941022,0.486634870302636,0.283604451492204,0.665188192387692,0.087834785693126,0.589405839739707,0.364295288292542,0.370784442784429,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0.436094052142534,1.98788780678127,1.51956613997496,0.397227542439656,9.75244510545967,2.12801029319014,0,0,0.98667019366864,0.622422070799533,0.269421344139376,0.163461903113459,0.302714855289863,0,0.234321431833797,2.49728061464256,0,1.79338416662161,0.469737994575059,0.323745888736263,0,0.408308342509787,0.368502951935304,0.723280468230358,5.94001428641027,3.4617370098998,0.910161361938026,3.59309070908119,0.168336113954066,0.375355559615893,0.554128230968366,0.877955241761676,2.14541457059314,1.95309476578576,0.567160915800105,1.79389635688862,1.2813443329114,0.635795703478686,4.80145753735044,1.95799805553034,1.03056216018252,3.35010341396862,2.53164498361899,2.63079913935236,2.01947019395292,1.84099797284599,3.39456719319505,4.9701342952326,1.0075209822764,1.01736355386293,0,0,0,0.365921118388786,0,0.116193942869518,0,0,0,0,4.5026865673502,0,2.78620756819187,1.44375896333917,0.118306800039844,0.337169380156203,0.241011029883482,0.220587945464788,0,0,0,0.588664395376038,0,0,0,1.2347220339942,2.94017422771084,1.26755034821831,0.982827216677626,0.590789906681404,0,0,0,0.219500570817251,0,0,0.0925884451585296,0.651616610620649,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0,0.1466765716419,0.775630294546667,21.4593867511129,0,3.19125739901845,4.16029747645464,1.02882949704857,0,0.266422179016099,1.71573592389777,2.71310802695722,0.823240336780769,0,0,0,0,2.61460037580088,1.3996218765488,0,0,0,1.4377491329495,1.14861935834114,0,1.01346914667305,0.821905290201534,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.858840442033979,2.00068208423871,0,2.28767947683888,2.49800584316026,1.89242898040722,0.702848489956279,1.80567659836631,6.82222512167955,5.17365356462525,0.664225598535437,0.184369168541703,2.60650843404249,1.56640925970192,1.02943027143257,0,0,0,1.81876542867756,1.66435439510497,0.907170879989041,4.96215615637554,1.07423381301644,4.49056151092918,4.10045277618243,3.07024349440022,4.18220194973379,4.45254199334973,2.15893571323718,3.19611105563629,1.47828880824856,3.63478100428535,1.85936605535935,0.120859449591622,0.40101294060657,0.0920809889358963,1.7222167224691,2.54927635209404,5.11385218341754,0.451199612907412,0.0770153371044148,0,0,0.73886140225013,0,0,0,0,1.35473218771926,1.50506932156456,0,0,0.447749509444357,0,0,0,0.656029291399411,0.976135183992909,0.9273691048295,1.28197250745681,0.330037999682352,0.574265537996172,0,0,2.22342652071881,0.462145851343933,0.921022048356777,0.689182862422653,0.537101224341368,1.45016693914229,0.426133137080504,0.445160178233687,0.330569830721956,0,0,0,0.464845549297286,5.98143458978216,0,1.23213432070436,0.532306030317022,0.869932992075073,1.66791797193528,0.572499546967965,0,0,0.571890581771475,0.511795582622668,0.42793898803392,1.59101623962968,0.78494864019923,0.539617372749944,0.823611089208164,0.235624804691373,0,0,0,0.48763373908959,1.70599442741899,0,1.9109987597118,7.21167702963935,1.13008116620243,0.551365343546124,2.65375590096488,6.13831239355268,2.89387767133344,0.655894752046633,0,0.30982349809975,0,0.143411352204052,0.294747123039363,0.35667105148125,2.12856638442359,6.75544432952525,3.62224382255892,0.379473173765715,0.699869440489966,0.0962221127255121,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0.121360521749513,0,0,0.47748896947538,0.890894042497916,0.614321404198464,0,0,0.556543525114529,0,0,0.796991953004279,0,0,0.102268682502155,0,0.622079175323615,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,1.44999915086959,0,0,0,0,0,0,0.885741385813839,0,0,0,0.295547618953547,0,0.10893846351899,0,1.30815439456455,0.569710279235006,0,0,0,0.957003479195758,1.55715908783166,0.533034776018635,0,0.156980256395025,0,0,0.19606253431774,0,0,0,0,0.816164040795739,0,0,0,0.265372693510018,0,0.296521128680622,0,0.104421949505455,0.067401132980677,0.802577647298789,0,0,0,0,0.394584402849391,0,0.30607276163049,1.0741718536843,0,0,0,0,0,0,0.284609546029793,0,0.5206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| ||
|short_description=p@chr16:4431722..4431771,+ | |short_description=p@chr16:4431722..4431771,+ | ||
}} | }} |
Latest revision as of 08:50, 25 July 2015
Short description: | p@chr16:4431722..4431771, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:4431722..4431771, + |
Coexpression cluster: | C1421_Mesenchymal_Preadipocyte_Fibroblast_tenocyte_Adipocyte_Osteoblast_Nucleus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.54e-25 | 76 |
preadipocyte | 4.52e-18 | 12 |
multi fate stem cell | 1.31e-16 | 427 |
somatic stem cell | 5.51e-16 | 433 |
stem cell | 3.49e-15 | 441 |
connective tissue cell | 5.37e-15 | 361 |
mesenchymal cell | 1.83e-13 | 354 |
skin fibroblast | 3.76e-13 | 23 |
fat cell | 2.00e-11 | 15 |
motile cell | 2.84e-10 | 386 |
stromal cell | 1.17e-09 | 28 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 4.22e-15 | 371 |
integument | 4.57e-13 | 46 |
integumental system | 4.57e-13 | 46 |
adipose tissue | 7.25e-12 | 14 |
omentum | 2.45e-10 | 6 |
peritoneum | 2.45e-10 | 6 |
abdominal cavity | 2.45e-10 | 6 |
visceral peritoneum | 2.45e-10 | 6 |
surface structure | 1.06e-09 | 99 |
skin of body | 1.32e-08 | 41 |
hypodermis | 1.43e-08 | 5 |
cavity lining | 2.29e-08 | 12 |
serous membrane | 2.29e-08 | 12 |
organ component layer | 4.68e-07 | 66 |