FFCP PHASE1:Hg19::chr16:53133084..53133121,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=80205 | |EntrezGene=entrezgene:80205 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=25701 | |HGNC=HGNC:25701 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=Q8NAR9 | |UniProt=uniprot:Q8NAR9 | ||
|association_with_transcript=12bp_to_uc002egz.1_5end | |association_with_transcript=12bp_to_uc002egz.1_5end | ||
|cluster_id=chr16:53133084..53133121,+ | |||
|description=CAGE_peak_4_at_CHD9_5end | |description=CAGE_peak_4_at_CHD9_5end | ||
|id=chr16:53133084..53133121,+ | |id=chr16:53133084..53133121,+ | ||
Revision as of 09:44, 25 July 2015
| Short description: | p4@CHD9 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_CHD9_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 12bp_to_uc002egz.1_5end |
| EntrezGene: | 80205 |
| HGNC: | 25701 |
| UniProt: | Q8NAR9 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@CHD9 |
|---|
0
20
40
60
80
100
120
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| myeloid leukocyte | 6.05e-40 | 72 |
| granulocyte monocyte progenitor cell | 3.40e-37 | 67 |
| macrophage dendritic cell progenitor | 1.42e-35 | 61 |
| monopoietic cell | 2.49e-34 | 59 |
| monocyte | 2.49e-34 | 59 |
| monoblast | 2.49e-34 | 59 |
| promonocyte | 2.49e-34 | 59 |
| leukocyte | 4.92e-34 | 136 |
| myeloid lineage restricted progenitor cell | 1.21e-33 | 66 |
| defensive cell | 2.62e-32 | 48 |
Showing 1 to 10 of 27 entries
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 1.97e-36 | 98 |
| blood island | 1.97e-36 | 98 |
| hemolymphoid system | 6.11e-34 | 108 |
| bone marrow | 1.13e-33 | 76 |
| bone element | 9.56e-32 | 82 |
| immune system | 1.07e-30 | 93 |
| skeletal element | 1.64e-30 | 90 |
| skeletal system | 8.04e-25 | 100 |
| musculoskeletal system | 6.81e-21 | 167 |
| lateral plate mesoderm | 9.34e-21 | 203 |
Showing 1 to 10 of 15 entries
