FFCP PHASE1:Hg19::chr17:38613568..38613587,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:38613568..38613587,+ | |||
|coexpression_cluster_id=C353 | |coexpression_cluster_id=C353 | ||
|description=CAGE_peak_at_chr17:38613568..38613587,+ | |description=CAGE_peak_at_chr17:38613568..38613587,+ | ||
|id=chr17:38613568..38613587,+ | |id=chr17:38613568..38613587,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.10e-19!180;CL:0000222!1.28e-13!119;CL:0000057!3.14e-13!75;CL:0000680!4.33e-12!57;CL:0000056!4.33e-12!57;CL:0000355!4.33e-12!57;CL:0000183!2.06e-11!59;CL:0000187!1.15e-10!54;CL:0000393!7.30e-10!60;CL:0000211!7.30e-10!60;CL:0000192!7.10e-09!42;CL:0000514!7.10e-09!42;CL:0002334!1.48e-07!12 | |ontology_enrichment_celltype=CL:0000055!3.10e-19!180;CL:0000222!1.28e-13!119;CL:0000057!3.14e-13!75;CL:0000680!4.33e-12!57;CL:0000056!4.33e-12!57;CL:0000355!4.33e-12!57;CL:0000183!2.06e-11!59;CL:0000187!1.15e-10!54;CL:0000393!7.30e-10!60;CL:0000211!7.30e-10!60;CL:0000192!7.10e-09!42;CL:0000514!7.10e-09!42;CL:0002334!1.48e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002334;7.82e-10;12!CL:0000499;1.46e-07;28!CL:0002540;2.91e-07;6!CL:0000135;7.79e-07;3!CL:0000388;7.79e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,5.87e-10,12;CL:0000057,1.18e-09,76;CL:0000499,1.15e-07,28;CL:0002540,3.60e-07,6;CL:0000048,6.90e-07,427;CL:0000135,8.04e-07,3;CL:0000388,8.04e-07,3;CL:0000153,9.38e-07,9;CL:0000447,9.38e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!3.93e-13!143;UBERON:0002100!2.69e-12!216;UBERON:0000914!5.10e-11!83;UBERON:0002329!5.10e-11!83;UBERON:0003077!5.10e-11!83;UBERON:0003059!5.10e-11!83;UBERON:0007282!5.10e-11!83;UBERON:0009618!5.10e-11!83;UBERON:0007285!5.10e-11!83;UBERON:0002385!1.21e-10!63;UBERON:0001015!1.21e-10!63;UBERON:0000383!1.21e-10!63;UBERON:0001134!3.06e-10!61;UBERON:0002036!3.06e-10!61;UBERON:0003082!3.06e-10!61;UBERON:0002049!5.13e-10!79;UBERON:0007798!5.13e-10!79;UBERON:0000490!5.79e-09!138;UBERON:0004290!7.55e-09!70;UBERON:0003914!2.27e-08!118;UBERON:0000486!2.71e-08!82;UBERON:0003104!1.69e-07!238;UBERON:0009142!1.69e-07!238;UBERON:0001981!1.97e-07!60;UBERON:0007500!1.97e-07!60;UBERON:0004537!1.97e-07!60;UBERON:0006965!1.97e-07!60;UBERON:0004872!2.45e-07!84;UBERON:0001637!3.09e-07!42;UBERON:0003509!3.09e-07!42;UBERON:0004572!3.09e-07!42;UBERON:0000055!3.41e-07!69;UBERON:0004573!4.98e-07!33;UBERON:0004571!4.98e-07!33;UBERON:0001009!7.06e-07!113 | |ontology_enrichment_uberon=UBERON:0005256!3.93e-13!143;UBERON:0002100!2.69e-12!216;UBERON:0000914!5.10e-11!83;UBERON:0002329!5.10e-11!83;UBERON:0003077!5.10e-11!83;UBERON:0003059!5.10e-11!83;UBERON:0007282!5.10e-11!83;UBERON:0009618!5.10e-11!83;UBERON:0007285!5.10e-11!83;UBERON:0002385!1.21e-10!63;UBERON:0001015!1.21e-10!63;UBERON:0000383!1.21e-10!63;UBERON:0001134!3.06e-10!61;UBERON:0002036!3.06e-10!61;UBERON:0003082!3.06e-10!61;UBERON:0002049!5.13e-10!79;UBERON:0007798!5.13e-10!79;UBERON:0000490!5.79e-09!138;UBERON:0004290!7.55e-09!70;UBERON:0003914!2.27e-08!118;UBERON:0000486!2.71e-08!82;UBERON:0003104!1.69e-07!238;UBERON:0009142!1.69e-07!238;UBERON:0001981!1.97e-07!60;UBERON:0007500!1.97e-07!60;UBERON:0004537!1.97e-07!60;UBERON:0006965!1.97e-07!60;UBERON:0004872!2.45e-07!84;UBERON:0001637!3.09e-07!42;UBERON:0003509!3.09e-07!42;UBERON:0004572!3.09e-07!42;UBERON:0000055!3.41e-07!69;UBERON:0004573!4.98e-07!33;UBERON:0004571!4.98e-07!33;UBERON:0001009!7.06e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.61e-12;9!UBERON:0000042;4.61e-12;9!UBERON:0004905;9.26e-11;8!UBERON:0000982;9.26e-11;8!UBERON:0004770;9.26e-11;8!UBERON:0003688;2.26e-10;6!UBERON:0002358;2.26e-10;6!UBERON:0003684;2.26e-10;6!UBERON:0001178;2.26e-10;6!UBERON:0011135;4.55e-09;5!UBERON:0002216;4.55e-09;5!UBERON:0011134;4.55e-09;5!UBERON:0002209;4.55e-09;5!UBERON:0002213;4.55e-09;5!UBERON:0007844;4.55e-09;5!UBERON:0011138;4.55e-09;5!UBERON:0001130;4.55e-09;5!UBERON:0001066;4.55e-09;5!UBERON:0001468;4.55e-09;5!UBERON:0007846;7.79e-07;3!UBERON:0000043;7.79e-07;3!UBERON:0007845;7.79e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,5.19e-11,8;UBERON:0000982,5.19e-11,8;UBERON:0004770,5.19e-11,8;UBERON:0003688,3.94e-10,6;UBERON:0002358,3.94e-10,6;UBERON:0003684,3.94e-10,6;UBERON:0001178,3.94e-10,6;UBERON:0011135,2.31e-09,5;UBERON:0002216,2.31e-09,5;UBERON:0011134,2.31e-09,5;UBERON:0002209,2.31e-09,5;UBERON:0002213,2.31e-09,5;UBERON:0005856,2.31e-09,5;UBERON:0005866,2.31e-09,5;UBERON:0005863,2.31e-09,5;UBERON:0007844,2.31e-09,5;UBERON:0011138,2.31e-09,5;UBERON:0001130,2.31e-09,5;UBERON:0001066,2.31e-09,5;UBERON:0001468,2.31e-09,5;UBERON:0004457,2.02e-08,12;UBERON:0000042,2.02e-08,12;UBERON:0007846,8.04e-07,3;UBERON:0000043,8.04e-07,3;UBERON:0007845,8.04e-07,3 | |||
|phase1_expression=3.81524596468169,4.28201047781966,3.10099689011137,3.00219895059391,2.23480547213644,0.872338524100369,0,0.631719873426831,3.3954131665979,0,0.697801167972428,0,0,2.72285976512103,4.63956326019082,1.34465029290355,1.20538905604795,0.730310090387373,1.46379839637152,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0.670700859703636,0.12786256184353,2.1686349143074,2.50668955317945,6.37324683427624,0,1.94653948121054,0.283604451492204,0.665188192387692,0.351339142772504,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0.694281003215189,0,1.67799774483962,1.37559020970034,0.208994966536811,0.258416759169329,0.35576626268671,0,0,0,1.22031028774085,0.367663080345869,3.24056779152704,0.892997282840798,0,0,0,0.949265659568129,0.549605231791222,0,0,0.436094052142534,2.48485975847659,0.25326102332916,0.132409180813219,0.573673241497627,1.06400514659507,1.12135520028461,0,1.97334038733728,0,0.67355336034844,0.163461903113459,2.57307626996383,1.15235184896,0,0,0,0.448346041655403,0.469737994575059,0,0,0.816616685019573,0.61417158655884,2.16984140469107,0,3.70900393917835,0,1.43723628363248,0.168336113954066,0.250237039743928,0.277064115484183,0.877955241761676,4.90380473278431,4.35690370829131,0.340296549480063,0.358779271377724,0.85422955527427,1.27159140695737,0.600182192168805,0.92747276314595,0,1.30281799432113,0,0.584622030967192,0.252433774244115,1.19664868234989,1.61646056818812,0.710019185033229,0.705264687593482,1.18692414617341,0,0,0,0,0.132529768321485,0.232387885739037,0,0,0,0,2.57296375277154,0,0.464367928031979,0,0,0,0,0.110293972732394,0,0,0.134831308160164,0,0.38474715694639,0.738155454624648,0,0,0,1.26755034821831,0.982827216677626,2.36315962672562,0,0,0,0,0,0,0.0925884451585296,0.325808305310325,1.03993478527958,7.21656710126366,0,0,0,0.462985512576611,0.380508304469197,0,0.858486162094873,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0.308482478109971,0,0,0.672786506072164,0.87192013766656,1.98013371716565,0.258543431515556,7.15312891703765,1.690605505112,0.797814349754612,2.08014873822732,1.02882949704857,2.83698264046557,3.19706614819319,1.28680194292333,2.17048642156577,0,0.325736184293735,0.710783897485092,1.58390374586686,1.50719688529793,1.74306691720059,2.69927076191554,0,0.502257091432126,0,0.958499421966331,1.14861935834114,0,2.89562613335158,2.87666851570537,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,6.87072353627183,10.5035809422532,1.89885516589815,2.70362119990049,6.95873056308931,3.46945313074656,1.28855556491985,0.902838299183157,2.27407504055985,1.03473071292505,0,0.921845842708516,0.955719759148911,1.37060810223918,0,0,0,0,0,0,0.30239029332968,1.48864684691266,1.53461973288062,7.85848264412606,2.43464383585832,2.04682899626681,3.37793234401576,2.96836132889982,0.308419387605311,2.30830242907065,0.164254312027618,0.519254429183621,2.44041794765914,0,0,0.0920809889358963,0.574072240823034,2.00300284807389,1.31124414959424,0,0,0.784349769176855,0,0,2.27466768141793,0.170093705276516,0.215915916102139,1.54227252690289,0.270946437543853,4.01351819083883,0,0,0.447749509444357,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0.386682873168488,0.924291702687866,1.22802939780904,0.137836572484531,1.28904293841928,2.32026710262766,1.02271952899321,0.178064071293475,0,0,0,0,0.929691098594572,2.20368642781448,0.6970372701606,0.616067160352178,0,0.869932992075073,0.37064843820784,0.143124886741991,0.744316738719335,0.632758849437452,1.5250415513906,0.511795582622668,1.28381696410176,0.95460974377781,0,0.359744915166629,1.09814811894422,0.589062011728432,0.404364963146632,1.58510321173008,0.421258456238981,0,1.46228093778771,2.11300293513511,0.136499911407986,0.565621727814851,0,0,1.99031692572366,0.876901770507525,1.73632660280006,2.62357900818653,0,0.30982349809975,0.563391205064483,0.143411352204052,0.196498082026242,0,0.709522128141196,9.28873595309722,8.56166721695745,0.379473173765715,1.74967360122491,0.0962221127255121,0,0,0.0941438007767792,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0.667852230137435,0,0,0.19924798825107,0,0,0,0,3.11039587661807,0.0898683511473268,0,0,0.789147245095469,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0.344743373241465,0.583209226766509,0,0,0.120596438625408,0,0,0,0,0,0,0.923403102045565,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.789168805698781,0,0.30607276163049,1.01098527405581,0,0,0.664653872707185,0.661983911750998,0,0,0,0,0.173559738335131,0,0,1.04836000945218,0,0,0,0,0.290967049465258,0,0.451961481561065,0,0,0,0,0.0801588202515337,0,1.19885765749278,0,0,0,0,0.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| ||
|short_description=p@chr17:38613568..38613587,+ | |short_description=p@chr17:38613568..38613587,+ | ||
}} | }} |
Latest revision as of 16:29, 25 July 2015
Short description: | p@chr17:38613568..38613587, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38613568..38613587, + |
Coexpression cluster: | C353_tenocyte_Nucleus_Chondrocyte_Anulus_Fibroblast_Synoviocyte_tridermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 5.87e-10 | 12 |
fibroblast | 1.18e-09 | 76 |
stromal cell | 1.15e-07 | 28 |
mesenchymal stem cell of the bone marrow | 3.60e-07 | 6 |
multi fate stem cell | 6.90e-07 | 427 |
fibrocyte | 8.04e-07 | 3 |
tendon cell | 8.04e-07 | 3 |
GAG secreting cell | 9.38e-07 | 9 |
carbohydrate secreting cell | 9.38e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
articulation | 5.19e-11 | 8 |
skeletal joint | 5.19e-11 | 8 |
articular system | 5.19e-11 | 8 |
omentum | 3.94e-10 | 6 |
peritoneum | 3.94e-10 | 6 |
abdominal cavity | 3.94e-10 | 6 |
visceral peritoneum | 3.94e-10 | 6 |
intervertebral cartilage | 2.31e-09 | 5 |
symphysis | 2.31e-09 | 5 |
nonsynovial joint | 2.31e-09 | 5 |
fibrous joint | 2.31e-09 | 5 |
cartilaginous joint | 2.31e-09 | 5 |
developing mesenchymal condensation | 2.31e-09 | 5 |
pre-cartilage condensation | 2.31e-09 | 5 |
cartilaginous condensation | 2.31e-09 | 5 |
cartilage element | 2.31e-09 | 5 |
post-cranial axial skeletal system | 2.31e-09 | 5 |
vertebral column | 2.31e-09 | 5 |
intervertebral disk | 2.31e-09 | 5 |
intervertebral joint | 2.31e-09 | 5 |
cavity lining | 2.02e-08 | 12 |
serous membrane | 2.02e-08 | 12 |
dense regular connective tissue | 8.04e-07 | 3 |
tendon | 8.04e-07 | 3 |
regular connective tissue | 8.04e-07 | 3 |