FFCP PHASE1:Hg19::chr17:39659525..39659561,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:39659525..39659561,+ | |||
|coexpression_cluster_id=C60 | |||
|description=CAGE_peak_at_chr17:39659525..39659561,+ | |||
|id=chr17:39659525..39659561,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009143;5.56e-16;1!UBERON:0008814;1.29e-08;2!UBERON:0010056;1.29e-08;2 | |||
|ontology_enrichment_disease=DOID:1749!1.45e-16!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;2.95e-15;1!DOID:3149;2.95e-15;1!DOID:3451;2.77e-08;2!DOID:4159;2.77e-08;2!DOID:0060122;2.77e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,3.66e-15,1;DOID:3149,3.66e-15,1;DOID:3451,3.08e-08,2;DOID:4159,3.08e-08,2;DOID:0060122,3.08e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000974!2.33e-12!10;UBERON:0003127!1.45e-11!2;UBERON:0000341!2.44e-11!2;UBERON:0001004!7.89e-11!72;UBERON:0000161!3.50e-10!35;UBERON:0000065!1.48e-09!53;UBERON:0000072!2.27e-09!46;UBERON:0001042!1.52e-08!10;UBERON:0009145!1.52e-08!10;UBERON:0000002!2.43e-08!6;UBERON:0001560!2.43e-08!6;UBERON:0000166!2.50e-08!21;UBERON:0001723!3.18e-08!3;UBERON:0001033!3.18e-08!3;UBERON:0010056!3.18e-08!3;UBERON:0006562!8.99e-08!11;UBERON:0004119!1.95e-07!169;UBERON:0000925!1.95e-07!169;UBERON:0006595!1.95e-07!169;UBERON:0003126!3.04e-07!7;UBERON:0001005!3.04e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0003127;7.51e-29;2!UBERON:0001723;3.01e-20;3!UBERON:0001033;3.01e-20;3!UBERON:0005795;8.02e-16;1!UBERON:0002372;1.34e-15;1!UBERON:0001961;1.34e-15;1!UBERON:0001744;1.34e-15;1!UBERON:0001042;1.34e-15;1!UBERON:0001735;1.34e-15;1!UBERON:0000002;1.46e-10;6!UBERON:0001560;1.46e-10;6!UBERON:0003126;5.94e-09;7!UBERON:0001005;5.94e-09;7!UBERON:0006562;1.86e-08;2!UBERON:0000341;2.00e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,8.07e-29,2;UBERON:0001723,3.01e-20,3;UBERON:0001033,3.01e-20,3;UBERON:0010056,3.01e-20,3;UBERON:0002372,1.34e-15,1;UBERON:0001961,1.34e-15,1;UBERON:0001744,1.34e-15,1;UBERON:0001735,1.34e-15,1;UBERON:0001042,1.41e-13,10;UBERON:0009145,1.41e-13,10;UBERON:0006562,2.13e-12,11;UBERON:0000002,1.50e-10,6;UBERON:0001560,1.50e-10,6;UBERON:0003126,6.06e-09,7;UBERON:0001005,6.06e-09,7;UBERON:0000341,2.00e-08,2;UBERON:0000072,1.49e-07,47;UBERON:0001557,2.08e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,4.18680700783456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0.227586896570999,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,23.0049178059695,13.9279967891873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587954384486266,0.0870592065804026,0,0,0,0,0,60.7151243217506,0,1.80784592624426,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0063040627978,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0.589848616738702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.59552918554414,0.476128862927481,0,0.0620747142958579,0,0,0,34.3992461677199,20.5339980651169,10.8436805353486,2.58199939413635,1.33064142618405,0,0,0,0,0,0.122241444182866,23.1930821639971,0,0,0 | |||
|short_description=p@chr17:39659525..39659561,+ | |||
}} |
Latest revision as of 16:41, 25 July 2015
Short description: | p@chr17:39659525..39659561, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39659525..39659561, + |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 8.07e-29 | 2 |
tongue | 3.01e-20 | 3 |
gustatory system | 3.01e-20 | 3 |
future tongue | 3.01e-20 | 3 |
tonsil | 1.34e-15 | 1 |
mucosa-associated lymphoid tissue | 1.34e-15 | 1 |
lymphoid tissue | 1.34e-15 | 1 |
tonsillar ring | 1.34e-15 | 1 |
chordate pharynx | 1.41e-13 | 10 |
pharyngeal region of foregut | 1.41e-13 | 10 |
pharynx | 2.13e-12 | 11 |
uterine cervix | 1.50e-10 | 6 |
neck of organ | 1.50e-10 | 6 |
trachea | 6.06e-09 | 7 |
respiratory airway | 6.06e-09 | 7 |
throat | 2.00e-08 | 2 |
segment of respiratory tract | 1.49e-07 | 47 |
upper respiratory tract | 2.08e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 3.66e-15 | 1 |
keratoacanthoma | 3.66e-15 | 1 |
skin carcinoma | 3.08e-08 | 2 |
skin cancer | 3.08e-08 | 2 |
integumentary system cancer | 3.08e-08 | 2 |