FFCP PHASE1:Hg19::chr19:46706338..46706343,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-19bp_to_ENST00000379355,uc002pec.2_5end | |association_with_transcript=-19bp_to_ENST00000379355,uc002pec.2_5end | ||
|cluster_id=chr19:46706338..46706343,- | |||
|description=CAGE_peak_1_at_ENST00000379355_5end,CAGE_peak_1_at_uc002pec.2_5end | |description=CAGE_peak_1_at_ENST00000379355_5end,CAGE_peak_1_at_uc002pec.2_5end | ||
|id=chr19:46706338..46706343,- | |id=chr19:46706338..46706343,- | ||
|ontology_enrichment_celltype=CL:0000066!9.60e-20!254;CL:0000223!1.58e-14!59;CL:0002076!3.64e-11!43;CL:0002251!8.38e-11!21;CL:0002150!3.82e-07!3;CL:0000861!3.82e-07!3;CL:0002541!9.11e-07!3 | |ontology_enrichment_celltype=CL:0000066!9.60e-20!254;CL:0000223!1.58e-14!59;CL:0002076!3.64e-11!43;CL:0002251!8.38e-11!21;CL:0002150!3.82e-07!3;CL:0000861!3.82e-07!3;CL:0002541!9.11e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.75e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.69e-15,253;CL:0002541,1.75e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.03e-18;29 | |||
|ontology_enrichment_disease=DOID:305!1.89e-38!106;DOID:0050687!2.11e-32!143;DOID:162!7.33e-25!235;DOID:14566!6.02e-24!239;DOID:1749!5.78e-11!14;DOID:170!1.33e-08!6 | |ontology_enrichment_disease=DOID:305!1.89e-38!106;DOID:0050687!2.11e-32!143;DOID:162!7.33e-25!235;DOID:14566!6.02e-24!239;DOID:1749!5.78e-11!14;DOID:170!1.33e-08!6 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.83e-15;14!DOID:305;1.87e-11;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.12e-37,106;DOID:0050687,1.99e-30,143;DOID:162,1.71e-21,235;DOID:14566,7.93e-21,239;DOID:1749,3.04e-15,14 | |||
|ontology_enrichment_uberon=UBERON:0001737!4.04e-20!9;UBERON:0001557!3.35e-16!19;UBERON:0001007!5.07e-13!155;UBERON:0001555!5.07e-13!155;UBERON:0007026!5.07e-13!155;UBERON:0000077!5.76e-13!130;UBERON:0004119!9.30e-12!169;UBERON:0000925!9.30e-12!169;UBERON:0006595!9.30e-12!169;UBERON:0004921!2.87e-11!129;UBERON:0004185!2.87e-11!129;UBERON:0001004!5.34e-11!72;UBERON:0001041!5.39e-11!98;UBERON:0000072!4.70e-10!46;UBERON:0000166!1.26e-08!21;UBERON:0000161!2.54e-08!35;UBERON:0000065!4.14e-08!53;UBERON:0008947!5.34e-08!38;UBERON:0003258!5.34e-08!38;UBERON:0000344!6.18e-07!12;UBERON:0000476!9.11e-07!3;UBERON:0000920!9.11e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.01e-33;9!UBERON:0001557;2.01e-33;9!UBERON:0000072;1.42e-12;37!UBERON:0003124;1.75e-10;3!UBERON:0000920;1.75e-10;3!UBERON:0000065;1.47e-09;44!UBERON:0005631;2.20e-08;10!UBERON:0000158;2.20e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.25e-33,9;UBERON:0001557,7.89e-15,19;UBERON:0008947,1.49e-13,38;UBERON:0003258,1.49e-13,38;UBERON:0000920,1.75e-10,3;UBERON:0000072,2.20e-10,47;UBERON:0001004,7.03e-09,74;UBERON:0000065,1.16e-08,54;UBERON:0005631,3.86e-08,14;UBERON:0000158,3.86e-08,14;UBERON:0003124,1.28e-07,7;UBERON:0001041,5.87e-07,87 | |||
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| ||
|short_description=p1@ENST00000379355,p1@uc002pec.2 | |short_description=p1@ENST00000379355,p1@uc002pec.2 | ||
}} | }} |
Latest revision as of 15:13, 27 July 2015
Short description: | p1@ENST00000379355, p1@uc002pec.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000379355_5end, CAGE_peak_1_at_uc002pec.2_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_ENST00000379355, uc002pec.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.69e-15 | 253 |
chorionic membrane mesenchymal stem cell | 1.75e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.25e-33 | 9 |
upper respiratory tract | 7.89e-15 | 19 |
respiratory primordium | 1.49e-13 | 38 |
endoderm of foregut | 1.49e-13 | 38 |
egg chorion | 1.75e-10 | 3 |
segment of respiratory tract | 2.20e-10 | 47 |
respiratory system | 7.03e-09 | 74 |
respiratory tract | 1.16e-08 | 54 |
extraembryonic membrane | 3.86e-08 | 14 |
membranous layer | 3.86e-08 | 14 |
chorion | 1.28e-07 | 7 |
foregut | 5.87e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.12e-37 | 106 |
cell type cancer | 1.99e-30 | 143 |
cancer | 1.71e-21 | 235 |
disease of cellular proliferation | 7.93e-21 | 239 |
squamous cell carcinoma | 3.04e-15 | 14 |