FFCP PHASE1:Hg19::chr1:179057025..179057045,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:179057025..179057045,+ | |||
|description=CAGE_peak_at_chr1:179057025..179057045,+ | |description=CAGE_peak_at_chr1:179057025..179057045,+ | ||
|id=chr1:179057025..179057045,+ | |id=chr1:179057025..179057045,+ | ||
|ontology_enrichment_celltype=CL:0000115!3.92e-12!35;CL:0002139!4.60e-11!24;CL:0002078!2.37e-10!44;CL:0000213!1.26e-08!57;CL:0000215!1.26e-08!57;CL:0000222!1.32e-08!119;CL:0002322!2.63e-08!5;CL:0000039!1.88e-07!7;CL:0000586!1.88e-07!7 | |ontology_enrichment_celltype=CL:0000115!3.92e-12!35;CL:0002139!4.60e-11!24;CL:0002078!2.37e-10!44;CL:0000213!1.26e-08!57;CL:0000215!1.26e-08!57;CL:0000222!1.32e-08!119;CL:0002322!2.63e-08!5;CL:0000039!1.88e-07!7;CL:0000586!1.88e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0002322;3.13e-29;5!CL:0002138;1.88e-23;6!CL:0000039;2.19e-20;7!CL:0000586;2.19e-20;7!CL:0000115;5.03e-18;36!CL:0002139;2.47e-17;24!CL:0002144;2.74e-17;3!CL:0002078;1.12e-16;45!CL:0002321;1.37e-09;15!CL:0000540;3.10e-09;6!CL:0000404;3.10e-09;6!CL:0002681;2.25e-07;12!CL:0002584;2.25e-07;12!CL:0000213;2.37e-07;58!CL:0000215;2.37e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.14e-29,5;CL:0000115,2.43e-23,36;CL:0005020,2.61e-23,6;CL:0002138,2.61e-23,6;CL:0005022,2.61e-23,6;CL:0002078,4.29e-21,45;CL:0000039,1.99e-20,7;CL:0000586,1.99e-20,7;CL:0002139,2.96e-17,24;CL:0002144,3.34e-17,3;CL:0000213,1.71e-13,58;CL:0000215,1.71e-13,58;CL:0000540,2.90e-09,6;CL:0000031,2.90e-09,6;CL:0000404,2.90e-09,6;CL:0000066,1.59e-08,253;CL:0002681,2.22e-07,12;CL:0002584,2.22e-07,12;CL:0000047,4.73e-07,8;CL:0002321,6.74e-07,250 | |||
|ontology_enrichment_development_v019=CL:0005022;1.88e-23;6!UBERON:0009117;1.87e-09;10!UBERON:0005564;1.87e-09;10!CL:0000031;3.10e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;8.31e-09;22!DOID:2994;8.31e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,8.31e-09,22;DOID:2994,8.31e-09,22 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;1.50e-17;8!UBERON:0004536;1.50e-17;8!UBERON:0006558;1.50e-17;8!UBERON:0010523;2.74e-17;3!UBERON:0001915;2.74e-17;3!UBERON:0001982;2.74e-17;3!UBERON:0002465;5.32e-14;10!UBERON:0000473;8.53e-12;8!UBERON:0000353;6.20e-09;15!UBERON:0003135;1.34e-08;11!UBERON:0001225;2.25e-07;12!UBERON:0008987;2.25e-07;12!UBERON:0000922;9.46e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,1.92e-17,8;UBERON:0004536,1.92e-17,8;UBERON:0006558,1.92e-17,8;UBERON:0010523,3.34e-17,3;UBERON:0001915,3.34e-17,3;UBERON:0001982,3.34e-17,3;UBERON:0002465,6.45e-14,10;UBERON:0000473,7.85e-12,8;UBERON:0000353,5.99e-09,15;UBERON:0003135,1.26e-08,11;UBERON:0001225,2.22e-07,12;UBERON:0008987,2.22e-07,12 | |||
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| ||
|short_description=p@chr1:179057025..179057045,+ | |short_description=p@chr1:179057025..179057045,+ | ||
}} | }} |
Latest revision as of 00:50, 28 July 2015
Short description: | p@chr1:179057025..179057045, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:179057025..179057045, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.14e-29 | 5 |
endothelial cell | 2.43e-23 | 36 |
lymphangioblast | 2.61e-23 | 6 |
endothelial cell of lymphatic vessel | 2.61e-23 | 6 |
vascular lymphangioblast | 2.61e-23 | 6 |
meso-epithelial cell | 4.29e-21 | 45 |
germ line cell | 1.99e-20 | 7 |
germ cell | 1.99e-20 | 7 |
endothelial cell of vascular tree | 2.96e-17 | 24 |
capillary endothelial cell | 3.34e-17 | 3 |
lining cell | 1.71e-13 | 58 |
barrier cell | 1.71e-13 | 58 |
neuron | 2.90e-09 | 6 |
neuroblast | 2.90e-09 | 6 |
electrically signaling cell | 2.90e-09 | 6 |
epithelial cell | 1.59e-08 | 253 |
kidney cortical cell | 2.22e-07 | 12 |
renal cortical epithelial cell | 2.22e-07 | 12 |
neuronal stem cell | 4.73e-07 | 8 |
embryonic cell | 6.74e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 1.92e-17 | 8 |
lymph vasculature | 1.92e-17 | 8 |
lymphatic part of lymphoid system | 1.92e-17 | 8 |
microcirculatory vessel | 3.34e-17 | 3 |
endothelium of capillary | 3.34e-17 | 3 |
capillary | 3.34e-17 | 3 |
lymphoid system | 6.45e-14 | 10 |
testis | 7.85e-12 | 8 |
parenchyma | 5.99e-09 | 15 |
male reproductive organ | 1.26e-08 | 11 |
cortex of kidney | 2.22e-07 | 12 |
renal parenchyma | 2.22e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 8.31e-09 | 22 |
germ cell cancer | 8.31e-09 | 22 |