FFCP PHASE1:Hg19::chr1:31907140..31907157,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:31907140..31907157,+
|short_description=p@chr1:31907140..31907157,+
|description=CAGE_peak_at_chr1:31907140..31907157,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:31907140..31907157,+ | |||
|coexpression_cluster_id=C3969 | |||
|description=CAGE_peak_at_chr1:31907140..31907157,+ | |||
|id=chr1:31907140..31907157,+ | |||
|ontology_enrichment_celltype=CL:0002076!2.47e-14!43;CL:0000223!3.72e-12!59;CL:0002159!1.21e-10!13;CL:0002368!2.54e-10!13;CL:0000066!6.14e-09!254;CL:0000362!2.02e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002159;6.31e-25;14!CL:0000317;1.33e-15;2!CL:1000448;1.33e-15;2!CL:0002308;1.33e-15;2!CL:0002140;1.33e-15;2!CL:0002368;1.49e-14;13!CL:0000362;2.21e-13;9!CL:0002231;1.91e-11;3!CL:0002328;3.10e-11;3!CL:0002076;7.28e-11;42!CL:0002166;1.03e-10;3!CL:0002077;5.58e-09;34!CL:0002202;3.04e-08;9!CL:0002632;3.04e-08;9!CL:0000312;6.45e-07;5!CL:0000622;9.17e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,5.59e-25,14;CL:0000317,9.16e-16,2;CL:1000448,9.16e-16,2;CL:0002308,9.16e-16,2;CL:0002140,9.16e-16,2;CL:0002368,1.32e-14,13;CL:0000362,2.01e-13,9;CL:0002076,2.95e-13,42;CL:0002231,1.87e-11,3;CL:0002328,3.11e-11,3;CL:0002166,1.14e-10,3;CL:0002077,7.76e-10,34;CL:0000223,3.24e-09,58;CL:0002202,3.24e-08,9;CL:0002632,3.24e-08,9;CL:0000312,6.85e-07,5;CL:0000622,7.93e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0006298;1.17e-08;1!UBERON:0005754;1.17e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!4.01e-14!169;UBERON:0000925!4.01e-14!169;UBERON:0006595!4.01e-14!169;UBERON:0003102!6.74e-14!95;UBERON:0000161!1.09e-10!35;UBERON:0001007!3.25e-10!155;UBERON:0001555!3.25e-10!155;UBERON:0007026!3.25e-10!155;UBERON:0000475!5.60e-08!365;UBERON:0006554!8.35e-08!44;UBERON:0001004!9.29e-08!72;UBERON:0005153!1.71e-07!37;UBERON:0001008!1.74e-07!45;UBERON:0000062!1.78e-07!511;UBERON:0003937!2.06e-07!12;UBERON:0005399!2.06e-07!12;UBERON:0000162!6.77e-07!14;UBERON:0001353!6.77e-07!14;UBERON:0000163!6.77e-07!14;UBERON:0006866!6.77e-07!14;UBERON:0000164!6.77e-07!14;UBERON:0000931!6.77e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002419;1.33e-15;2!UBERON:0007771;1.33e-15;2!UBERON:0003297;1.33e-15;2!UBERON:0001821;1.33e-15;2!UBERON:0003487;1.33e-15;2!UBERON:0001820;1.33e-15;2!UBERON:0004815;3.10e-11;3!UBERON:0002031;3.10e-11;3!UBERON:0000998;1.17e-08;1!UBERON:0001736;1.17e-08;1!UBERON:0006868;1.17e-08;1!UBERON:0001708;2.99e-08;4!UBERON:0003891;2.99e-08;4!UBERON:0000964;2.99e-08;4!UBERON:0010409;2.99e-08;4!UBERON:0008895;2.99e-08;4!UBERON:0001003;4.33e-08;15!UBERON:0007376;4.33e-08;15!UBERON:0002185;4.51e-07;5!UBERON:0011159;9.17e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002419,9.16e-16,2;UBERON:0007771,9.16e-16,2;UBERON:0003297,9.16e-16,2;UBERON:0001821,9.16e-16,2;UBERON:0003487,9.16e-16,2;UBERON:0001820,9.16e-16,2;UBERON:0005089,9.16e-16,2;UBERON:0005088,9.16e-16,2;UBERON:0003102,5.01e-12,99;UBERON:0004815,3.11e-11,3;UBERON:0002031,3.11e-11,3;UBERON:0000998,7.75e-09,1;UBERON:0006868,7.75e-09,1;UBERON:0001736,1.05e-08,1;UBERON:0006298,1.05e-08,1;UBERON:0001708,3.22e-08,4;UBERON:0008895,3.22e-08,4;UBERON:0000964,3.46e-08,4;UBERON:0010409,3.46e-08,4;UBERON:0004348,3.46e-08,4;UBERON:0005427,3.46e-08,4;UBERON:0001003,4.10e-08,15;UBERON:0007376,4.10e-08,15;UBERON:0007383,4.10e-08,15;UBERON:0003891,5.16e-08,4;UBERON:0002185,4.52e-07,5;UBERON:0011159,9.73e-07,5 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.422863212287913,0,0,0,2.53299878168311,0,0,0.245733936501509,0.697801167972428,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0.152826811495903,0,0,0,0,0,2.75826367343678,0.90361775633475,2.58827807116751,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0,0,0,0,0,0.130979075497713,0.728590576585084,1.48313777113772,0,0,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0,0.624320153660641,0,0.597794722207204,0.117434498643765,0,0,0.61246251376468,0.122834317311768,0.309977343527296,0,0.247266929278557,0,0,0.168336113954066,0.375355559615893,0,0,0,0.300476117813194,0,0,0.213557388818567,0,0,0.206105058476878,0,0.18611685633159,0,0.0974370051611986,0,0.184099797284599,0,0,0.201504196455281,0,0.386521706326594,1.36373060295417,0.573609190778008,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0.118306800039844,0.168584690078102,0,0.220587945464788,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0.343135620597051,2.96325770603289,1.1240175325762,0.904760751704678,0.0925884451585296,0,1.03993478527958,0,0,0,0,0,0.190254152234598,0,0,0,0,0.297262324577456,0,1.17587489739202,1.27597587518148,0.447792613514241,0.290633938513962,0.766765358330422,0,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0.532844358032199,0,0,0.823240336780769,0,0,0,0,0,0.099972991182057,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0,0.117141414992713,0,0,1.03473071292505,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0.248107807818777,0,0.561320188866147,0.256278298511402,0.511707249066704,0.482561763430822,0,0,0.710246901252508,0.164254312027618,1.55776328755086,0.116210378459959,0.120859449591622,5.21316822788541,3.59115856849996,0.34444334449382,0.182091168006717,0.393373244878272,0,0.0770153371044148,0,0,0,0,0,0,0,0,1.00337954770971,0.254876273045038,0,0.447749509444357,0,0,0.256450125116389,0,0,0.412164046590889,0.0915694648183434,0,1.14853107599234,1.95018073810956,0,0.096670718292122,0,0.15350367472613,0,0,0,0,0.0890320356467374,3.47098322258054,1.92190067365106,0.127612712494584,0.708104465988849,0.464845549297286,0,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0.78494864019923,0,0,0.117812402345686,0.202182481573316,1.58510321173008,0,0,0,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0.211107635297664,0,0,0.349934720244983,0.673554789078584,0.670302275535787,2.17781969722645,0.376575203107117,0.86101074534246,0,1.7737206141467,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.0898683511473268,0,0,0.197286811273867,0,0,0,0,0,0,0.174919999992391,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448788222048861,0,0.31900115973192,0.824378340616761,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619202951523374,0.611030144933625,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0.173559738335131,0.391969589657511,0.0870592065804026,0.873633341210151,0,0,0,0.0821154570532092,0.290967049465258,0,0,0.274083849293502,0,0,0,0,0,0,0,0,0,0.288109595976299,0,0.235694034616795,0,0,0.101998217636322,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0.714695326373367,0,0,0,0.864221491201268,0,0,0,0,0,2.78449243988357,0,0,0,0,0,0.106787412567695,0,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0.144921028610825,0.149254802886874,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0.265841714557995,0.521745061811734,0,0,0,0.181848659202559,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0,0,0.159633859057151,0,0,0,0,0,0.490738592505128,0,1.10057159113007,0.346576998451015,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0.546974809018219,0,0,0,0.255524855279191,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0.47775168788705,0,0,0,0,0,0,0.51215543128185,0,0,0.236664001461131,0,1.69354820076372,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0.485710993059139,0,0,0,0,0,0.150962843566674,0.694567422971502,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0.730336388246517,1.37618785021362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,0,0,0.193766729508018,0.0620747142958579,0,0.0636471582781649,0.202117188958219,0,0,0,0.502055437748735,0,0.244209805832924,0,0,0.179650404213174,0,0,0,0,0,0 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| ||
|short_description=p@chr1:31907140..31907157,+ | |||
}} | }} |
Latest revision as of 07:11, 28 July 2015
Short description: | p@chr1:31907140..31907157, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:31907140..31907157, + |
Coexpression cluster: | C3969_Prostate_Keratinocyte_liver_Small_Tracheal_Hepatocyte_Fibroblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 5.59e-25 | 14 |
sebum secreting cell | 9.16e-16 | 2 |
epithelial cell of sweat gland | 9.16e-16 | 2 |
epithelial cell of skin gland | 9.16e-16 | 2 |
acinar cell of sebaceous gland | 9.16e-16 | 2 |
respiratory epithelial cell | 1.32e-14 | 13 |
epidermal cell | 2.01e-13 | 9 |
endo-epithelial cell | 2.95e-13 | 42 |
epithelial cell of prostate | 1.87e-11 | 3 |
bronchial epithelial cell | 3.11e-11 | 3 |
epithelial cell of Malassez | 1.14e-10 | 3 |
ecto-epithelial cell | 7.76e-10 | 34 |
endodermal cell | 3.24e-09 | 58 |
epithelial cell of tracheobronchial tree | 3.24e-08 | 9 |
epithelial cell of lower respiratory tract | 3.24e-08 | 9 |
keratinocyte | 6.85e-07 | 5 |
acinar cell | 7.93e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin gland | 9.16e-16 | 2 |
epidermis gland | 9.16e-16 | 2 |
gland of integumental system | 9.16e-16 | 2 |
sebaceous gland | 9.16e-16 | 2 |
skin sebaceous gland | 9.16e-16 | 2 |
sweat gland | 9.16e-16 | 2 |
sweat gland placode | 9.16e-16 | 2 |
sebaceous gland placode | 9.16e-16 | 2 |
surface structure | 5.01e-12 | 99 |
lower respiratory tract epithelium | 3.11e-11 | 3 |
epithelium of bronchus | 3.11e-11 | 3 |
seminal vesicle | 7.75e-09 | 1 |
seminal fluid secreting gland | 7.75e-09 | 1 |
submandibular gland | 1.05e-08 | 1 |
submandibular gland primordium | 1.05e-08 | 1 |
jaw skeleton | 3.22e-08 | 4 |
splanchnocranium | 3.22e-08 | 4 |
cornea | 3.46e-08 | 4 |
eye surface | 3.46e-08 | 4 |
optic eminence | 3.46e-08 | 4 |
corneal primordium | 3.46e-08 | 4 |
skin epidermis | 4.10e-08 | 15 |
outer epithelium | 4.10e-08 | 15 |
enveloping layer of ectoderm | 4.10e-08 | 15 |
stroma | 5.16e-08 | 4 |
bronchus | 4.52e-07 | 5 |
primary subdivision of cranial skeletal system | 9.73e-07 | 5 |