FFCP PHASE1:Hg19::chr1:53512860..53512901,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:53512860..53512901,+ | |||
|description=CAGE_peak_at_chr1:53512860..53512901,+ | |description=CAGE_peak_at_chr1:53512860..53512901,+ | ||
|id=chr1:53512860..53512901,+ | |id=chr1:53512860..53512901,+ | ||
|ontology_enrichment_celltype=CL:0000222!1.02e-23!119;CL:0002139!5.98e-21!24;CL:0000213!7.77e-19!57;CL:0000215!7.77e-19!57;CL:0000071!2.76e-17!18;CL:0002546!2.76e-17!18;CL:0000115!2.38e-14!35;CL:0000359!1.79e-13!32;CL:0000192!5.18e-13!42;CL:0000514!5.18e-13!42;CL:1000413!1.38e-12!9;CL:0000220!8.11e-12!246;CL:0002321!1.37e-11!248;CL:0002078!1.48e-11!44;CL:0000076!4.16e-11!62;CL:0000055!1.99e-10!180;CL:0000187!7.85e-09!54;CL:0000183!1.53e-08!59;CL:0000680!4.44e-08!57;CL:0000056!4.44e-08!57;CL:0000355!4.44e-08!57;CL:0002544!1.10e-07!6;CL:0000393!2.08e-07!60;CL:0000211!2.08e-07!60;CL:0002594!2.29e-07!4;CL:0000077!2.55e-07!19;CL:0000569!4.70e-07!4;CL:0000011!4.70e-07!4;CL:0002494!5.92e-07!16 | |ontology_enrichment_celltype=CL:0000222!1.02e-23!119;CL:0002139!5.98e-21!24;CL:0000213!7.77e-19!57;CL:0000215!7.77e-19!57;CL:0000071!2.76e-17!18;CL:0002546!2.76e-17!18;CL:0000115!2.38e-14!35;CL:0000359!1.79e-13!32;CL:0000192!5.18e-13!42;CL:0000514!5.18e-13!42;CL:1000413!1.38e-12!9;CL:0000220!8.11e-12!246;CL:0002321!1.37e-11!248;CL:0002078!1.48e-11!44;CL:0000076!4.16e-11!62;CL:0000055!1.99e-10!180;CL:0000187!7.85e-09!54;CL:0000183!1.53e-08!59;CL:0000680!4.44e-08!57;CL:0000056!4.44e-08!57;CL:0000355!4.44e-08!57;CL:0002544!1.10e-07!6;CL:0000393!2.08e-07!60;CL:0000211!2.08e-07!60;CL:0002594!2.29e-07!4;CL:0000077!2.55e-07!19;CL:0000569!4.70e-07!4;CL:0000011!4.70e-07!4;CL:0002494!5.92e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000071;6.53e-13;18!CL:0000076;5.46e-11;63!CL:0002543;1.99e-10;6!CL:0002139;9.41e-10;24!CL:0002545;2.00e-08;2!CL:0000213;4.21e-08;58!CL:0000215;4.21e-08;58!CL:0000077;2.59e-07;19!CL:1000413;3.04e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000071,4.64e-13,18;CL:0002546,4.64e-13,18;CL:0000213,1.32e-11,58;CL:0000215,1.32e-11,58;CL:0000076,1.21e-10,63;CL:0002543,1.43e-10,6;CL:0002139,7.31e-10,24;CL:0000222,1.08e-08,121;CL:0002545,2.00e-08,2;CL:0000077,2.32e-07,19;CL:1000413,2.68e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;6.53e-13;18 | |||
|ontology_enrichment_disease=DOID:2394!3.59e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!3.05e-30!79;UBERON:0007798!3.05e-30!79;UBERON:0000055!1.15e-29!69;UBERON:0004535!3.33e-29!110;UBERON:0004872!4.89e-29!84;UBERON:0001009!5.31e-28!113;UBERON:0001981!1.08e-27!60;UBERON:0007500!1.08e-27!60;UBERON:0004537!1.08e-27!60;UBERON:0006965!1.08e-27!60;UBERON:0001637!9.59e-25!42;UBERON:0003509!9.59e-25!42;UBERON:0004572!9.59e-25!42;UBERON:0003914!3.55e-22!118;UBERON:0001986!2.76e-17!18;UBERON:0004638!2.76e-17!18;UBERON:0004852!2.76e-17!18;UBERON:0004573!2.16e-15!33;UBERON:0004571!2.16e-15!33;UBERON:0000487!2.14e-13!22;UBERON:0003915!1.38e-12!9;UBERON:0004700!1.38e-12!9;UBERON:0001917!1.38e-12!9;UBERON:0000490!2.23e-11!138;UBERON:0006914!2.59e-11!25;UBERON:0000947!1.57e-10!21;UBERON:0010191!1.57e-10!21;UBERON:0000025!5.35e-10!194;UBERON:0004111!1.25e-09!241;UBERON:0000948!7.79e-09!24;UBERON:0005498!7.79e-09!24;UBERON:0004140!7.79e-09!24;UBERON:0009881!7.79e-09!24;UBERON:0004141!7.79e-09!24;UBERON:0003084!7.79e-09!24;UBERON:0007005!7.79e-09!24;UBERON:0004139!7.79e-09!24;UBERON:0004291!7.79e-09!24;UBERON:0000992!1.21e-07!13;UBERON:0000477!1.31e-07!286;UBERON:0002385!1.55e-07!63;UBERON:0001015!1.55e-07!63;UBERON:0000383!1.55e-07!63;UBERON:0007100!1.65e-07!27;UBERON:0001310!2.29e-07!4;UBERON:0001134!3.35e-07!61;UBERON:0002036!3.35e-07!61;UBERON:0003082!3.35e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.53e-13;18!UBERON:0001986;6.53e-13;18!UBERON:0004852;6.53e-13;18!UBERON:0000487;1.29e-10;22!UBERON:0007500;1.72e-10;56!UBERON:0001981;1.72e-10;56!UBERON:0004537;1.72e-10;56!UBERON:0006914;2.26e-09;25!UBERON:0005800;2.00e-08;2!UBERON:0001515;2.00e-08;2!UBERON:0000055;1.96e-07;65!UBERON:0001638;3.04e-07;9!UBERON:0010260;3.04e-07;9!UBERON:0003920;3.04e-07;9!UBERON:0003915;3.04e-07;9!UBERON:0004700;3.04e-07;9!UBERON:0001917;3.04e-07;9!UBERON:0004582;3.04e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,4.64e-13,18;UBERON:0001986,4.64e-13,18;UBERON:0004852,4.64e-13,18;UBERON:0007500,2.30e-11,59;UBERON:0001981,2.30e-11,59;UBERON:0004537,2.30e-11,59;UBERON:0006965,2.30e-11,59;UBERON:0000487,9.78e-11,22;UBERON:0000055,8.61e-10,68;UBERON:0006914,1.77e-09,25;UBERON:0001637,1.81e-08,42;UBERON:0003509,1.81e-08,42;UBERON:0004572,1.81e-08,42;UBERON:0002049,1.82e-08,78;UBERON:0007798,1.82e-08,78;UBERON:0005800,2.00e-08,2;UBERON:0001515,2.00e-08,2;UBERON:0004872,6.37e-08,83;UBERON:0001638,2.44e-07,9;UBERON:0003920,2.44e-07,9;UBERON:0004582,2.44e-07,9;UBERON:0010260,2.68e-07,9;UBERON:0003915,2.68e-07,9;UBERON:0004700,2.68e-07,9;UBERON:0001917,2.68e-07,9 | |||
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| ||
|short_description=p@chr1:53512860..53512901,+ | |short_description=p@chr1:53512860..53512901,+ | ||
}} | }} |
Latest revision as of 09:07, 28 July 2015
Short description: | p@chr1:53512860..53512901, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:53512860..53512901, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood vessel endothelial cell | 4.64e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.64e-13 | 18 |
lining cell | 1.32e-11 | 58 |
barrier cell | 1.32e-11 | 58 |
squamous epithelial cell | 1.21e-10 | 63 |
vein endothelial cell | 1.43e-10 | 6 |
endothelial cell of vascular tree | 7.31e-10 | 24 |
mesodermal cell | 1.08e-08 | 121 |
thoracic aorta endothelial cell | 2.00e-08 | 2 |
mesothelial cell | 2.32e-07 | 19 |
endothelial cell of artery | 2.68e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 4.64e-13 | 18 |
endothelium | 4.64e-13 | 18 |
cardiovascular system endothelium | 4.64e-13 | 18 |
epithelial tube open at both ends | 2.30e-11 | 59 |
blood vessel | 2.30e-11 | 59 |
blood vasculature | 2.30e-11 | 59 |
vascular cord | 2.30e-11 | 59 |
simple squamous epithelium | 9.78e-11 | 22 |
vessel | 8.61e-10 | 68 |
squamous epithelium | 1.77e-09 | 25 |
artery | 1.81e-08 | 42 |
arterial blood vessel | 1.81e-08 | 42 |
arterial system | 1.81e-08 | 42 |
vasculature | 1.82e-08 | 78 |
vascular system | 1.82e-08 | 78 |
segment of aorta | 2.00e-08 | 2 |
thoracic aorta | 2.00e-08 | 2 |
splanchnic layer of lateral plate mesoderm | 6.37e-08 | 83 |
vein | 2.44e-07 | 9 |
venous blood vessel | 2.44e-07 | 9 |
venous system | 2.44e-07 | 9 |
umbilical blood vessel | 2.68e-07 | 9 |
endothelial tube | 2.68e-07 | 9 |
arterial system endothelium | 2.68e-07 | 9 |
endothelium of artery | 2.68e-07 | 9 |