FFCP PHASE1:Hg19::chr1:65936838..65936843,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:65936838..65936843,+ | |||
|description=CAGE_peak_at_chr1:65936838..65936843,+ | |description=CAGE_peak_at_chr1:65936838..65936843,+ | ||
|id=chr1:65936838..65936843,+ | |id=chr1:65936838..65936843,+ | ||
|ontology_enrichment_celltype=CL:0002564;1.85e-12;3!CL:0000135;2.74e-12;3!CL:0002615;2.74e-12;3!CL:0000388;2.74e-12;3!CL:0002552;6.78e-08;5!CL:0002540;7.58e-07;6 | |ontology_enrichment_celltype=CL:0002564!6.08e-14!3 | ||
| | |ontology_enrichment_celltype_v019=CL:0002564;1.85e-12;3!CL:0000135;2.74e-12;3!CL:0002615;2.74e-12;3!CL:0000388;2.74e-12;3!CL:0002552;6.78e-08;5!CL:0002540;7.58e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002564,1.85e-12,3;CL:0000135,2.31e-12,3;CL:0000388,2.31e-12,3;CL:0002615,3.24e-12,3;CL:0002552,6.55e-08,5;CL:0002540,7.58e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002242;1.85e-12;3!UBERON:0007846;2.74e-12;3!UBERON:0000043;2.74e-12;3!UBERON:0007845;2.74e-12;3!UBERON:0011135;5.35e-08;5!UBERON:0002216;5.35e-08;5!UBERON:0011134;5.35e-08;5!UBERON:0002209;5.35e-08;5!UBERON:0002213;5.35e-08;5!UBERON:0007844;5.35e-08;5!UBERON:0011138;5.35e-08;5!UBERON:0001130;5.35e-08;5!UBERON:0001066;5.35e-08;5!UBERON:0001468;5.35e-08;5!UBERON:0003688;8.72e-07;6!UBERON:0002358;8.72e-07;6!UBERON:0003684;8.72e-07;6!UBERON:0001178;8.72e-07;6 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002242!6.08e-14!3;UBERON:0003068!6.08e-14!3;UBERON:0002328!6.08e-14!3;UBERON:0004880!6.08e-14!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002242;1.85e-12;3!UBERON:0007846;2.74e-12;3!UBERON:0000043;2.74e-12;3!UBERON:0007845;2.74e-12;3!UBERON:0011135;5.35e-08;5!UBERON:0002216;5.35e-08;5!UBERON:0011134;5.35e-08;5!UBERON:0002209;5.35e-08;5!UBERON:0002213;5.35e-08;5!UBERON:0007844;5.35e-08;5!UBERON:0011138;5.35e-08;5!UBERON:0001130;5.35e-08;5!UBERON:0001066;5.35e-08;5!UBERON:0001468;5.35e-08;5!UBERON:0003688;8.72e-07;6!UBERON:0002358;8.72e-07;6!UBERON:0003684;8.72e-07;6!UBERON:0001178;8.72e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002242,1.85e-12,3;UBERON:0003068,1.85e-12,3;UBERON:0002328,1.85e-12,3;UBERON:0004880,1.85e-12,3;UBERON:0007846,2.31e-12,3;UBERON:0000043,2.31e-12,3;UBERON:0007845,2.31e-12,3;UBERON:0011135,5.35e-08,5;UBERON:0002216,5.35e-08,5;UBERON:0011134,5.35e-08,5;UBERON:0002209,5.35e-08,5;UBERON:0002213,5.35e-08,5;UBERON:0005856,5.35e-08,5;UBERON:0005866,5.35e-08,5;UBERON:0005863,5.35e-08,5;UBERON:0007844,5.35e-08,5;UBERON:0011138,5.35e-08,5;UBERON:0001130,5.35e-08,5;UBERON:0001066,5.35e-08,5;UBERON:0001468,5.35e-08,5;UBERON:0003688,9.49e-07,6;UBERON:0002358,9.49e-07,6;UBERON:0003684,9.49e-07,6;UBERON:0001178,9.49e-07,6 | |||
|phase1_expression=0,0.642301571672949,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0.413303124703062,1.18800285728205,0,0,0,0,0,0,0.438977620880838,0.612975591598039,0,0.226864366320042,0.179389635688862,0,0,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,3.92612773501248,0.500170521059677,0.542530047399471,0,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,2.0125432140206,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84870251452567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0.332660356546013,0,0,0,0,0,0.366724332548599,0,0,0,0 | |phase1_expression=0,0.642301571672949,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0.413303124703062,1.18800285728205,0,0,0,0,0,0,0.438977620880838,0.612975591598039,0,0.226864366320042,0.179389635688862,0,0,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,3.92612773501248,0.500170521059677,0.542530047399471,0,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,2.0125432140206,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84870251452567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0.332660356546013,0,0,0,0,0,0.366724332548599,0,0,0,0 | ||
|short_description=p@chr1:65936838..65936843,+ | |short_description=p@chr1:65936838..65936843,+ | ||
}} | }} |
Latest revision as of 09:52, 28 July 2015
Short description: | p@chr1:65936838..65936843, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:65936838..65936843, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 1.85e-12 | 3 |
fibrocyte | 2.31e-12 | 3 |
tendon cell | 2.31e-12 | 3 |
adipocyte of omentum tissue | 3.24e-12 | 3 |
fibroblast of gingiva | 6.55e-08 | 5 |
mesenchymal stem cell of the bone marrow | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
nucleus pulposus | 1.85e-12 | 3 |
axial mesoderm | 1.85e-12 | 3 |
notochord | 1.85e-12 | 3 |
chordamesoderm | 1.85e-12 | 3 |
dense regular connective tissue | 2.31e-12 | 3 |
tendon | 2.31e-12 | 3 |
regular connective tissue | 2.31e-12 | 3 |
intervertebral cartilage | 5.35e-08 | 5 |
symphysis | 5.35e-08 | 5 |
nonsynovial joint | 5.35e-08 | 5 |
fibrous joint | 5.35e-08 | 5 |
cartilaginous joint | 5.35e-08 | 5 |
developing mesenchymal condensation | 5.35e-08 | 5 |
pre-cartilage condensation | 5.35e-08 | 5 |
cartilaginous condensation | 5.35e-08 | 5 |
cartilage element | 5.35e-08 | 5 |
post-cranial axial skeletal system | 5.35e-08 | 5 |
vertebral column | 5.35e-08 | 5 |
intervertebral disk | 5.35e-08 | 5 |
intervertebral joint | 5.35e-08 | 5 |
omentum | 9.49e-07 | 6 |
peritoneum | 9.49e-07 | 6 |
abdominal cavity | 9.49e-07 | 6 |
visceral peritoneum | 9.49e-07 | 6 |