FFCP PHASE1:Hg19::chr1:869192..869225,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:869192..869225,+ | |||
|coexpression_cluster_id=C114 | |||
|description=CAGE_peak_at_chr1:869192..869225,+ | |||
|id=chr1:869192..869225,+ | |||
|ontology_enrichment_celltype=CL:0000133!1.90e-12!59;CL:0000064!3.31e-10!3;CL:0005012!3.31e-10!3;CL:0000067!3.31e-10!3;CL:0002304!3.31e-10!3;CL:0000221!4.39e-10!71;CL:0002319!2.46e-09!25;CL:0000047!1.00e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.55e-13;2!CL:0000242;1.55e-13;2!CL:0000095;1.91e-12;17!CL:0002319;5.90e-09;25!CL:0000243;7.65e-07;15!CL:0000125;7.65e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.55e-13,2;CL:0000095,1.91e-12,17;CL:0000123,1.91e-12,17;CL:0000333,1.12e-09,41;CL:0002319,5.90e-09,25;CL:0000133,6.26e-07,59;CL:0000243,7.65e-07,15;CL:0000125,7.65e-07,15;CL:0000030,7.65e-07,15;CL:0000339,7.65e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0003056;9.10e-34;3!UBERON:0006238;4.42e-10;10!CL:0000339;7.65e-07;15 | |||
|ontology_enrichment_disease=DOID:171!5.81e-12!10;DOID:169!1.50e-11!6;DOID:3095!1.82e-11!22;DOID:2994!1.82e-11!22 | |||
|ontology_enrichment_disease_v019=DOID:171;6.94e-11;10!DOID:3095;7.16e-11;22!DOID:2994;7.16e-11;22!DOID:3093;2.55e-09;11 | |||
|ontology_enrichment_disease_v019_2=DOID:171,6.94e-11,10;DOID:3095,7.16e-11,22;DOID:2994,7.16e-11,22;DOID:3093,2.55e-09,11 | |||
|ontology_enrichment_uberon=UBERON:0000970!7.82e-17!20;UBERON:0002104!5.40e-16!21;UBERON:0000020!1.55e-14!23;UBERON:0000966!6.64e-14!5;UBERON:0005388!6.64e-14!5;UBERON:0001802!6.64e-14!5;UBERON:0001032!6.77e-14!24;UBERON:0004456!6.77e-14!24;UBERON:0000013!9.39e-14!5;UBERON:0002410!9.39e-14!5;UBERON:0000019!4.42e-13!19;UBERON:0000047!4.42e-13!19;UBERON:0004088!4.42e-13!19;UBERON:0003072!4.42e-13!19;UBERON:0003071!4.42e-13!19;UBERON:0004128!4.42e-13!19;UBERON:0001456!8.66e-12!21;UBERON:0007625!2.15e-10!11;UBERON:0001778!3.31e-10!3;UBERON:0001775!3.31e-10!3;UBERON:0005085!2.14e-08!29;UBERON:0000488!7.19e-08!4;UBERON:0000010!7.41e-08!8;UBERON:0000924!1.97e-07!173;UBERON:0006601!1.97e-07!173;UBERON:0000073!3.70e-07!94;UBERON:0001016!3.70e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;9.93e-21;5!UBERON:0005388;9.93e-21;5!UBERON:0001802;9.93e-21;5!UBERON:0000970;7.97e-12;20!UBERON:0002104;2.70e-11;21!UBERON:0000020;2.26e-10;23!UBERON:0001032;5.74e-10;24!UBERON:0004456;5.74e-10;24!UBERON:0002346;1.69e-07;4!UBERON:0000923;1.69e-07;4!UBERON:0010316;1.69e-07;4!UBERON:0005291;1.69e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.85e-17,6;UBERON:0005388,1.85e-17,6;UBERON:0001802,1.85e-17,6;UBERON:0000970,2.70e-11,21;UBERON:0002104,2.70e-11,21;UBERON:0000020,5.74e-10,24;UBERON:0001032,5.74e-10,24;UBERON:0004456,5.74e-10,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.38971111170799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.54605581059993,0,0,0,0,0,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,3.77386839888386,0,0,0,0,3.22232987073406,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07281978112303,4.7404083519818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,12.0363575960865,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:869192..869225,+ | |||
}} |
Latest revision as of 10:55, 28 July 2015
Short description: | p@chr1:869192..869225, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:869192..869225, + |
Coexpression cluster: | C114_teratocarcinoma_medulloblastoma_carcinosarcoma_iPS_anaplastic_acute_neuroblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.55e-13 | 2 |
neuron associated cell | 1.91e-12 | 17 |
neuron associated cell (sensu Vertebrata) | 1.91e-12 | 17 |
migratory neural crest cell | 1.12e-09 | 41 |
neural cell | 5.90e-09 | 25 |
neurectodermal cell | 6.26e-07 | 59 |
glial cell (sensu Vertebrata) | 7.65e-07 | 15 |
glial cell | 7.65e-07 | 15 |
glioblast | 7.65e-07 | 15 |
glioblast (sensu Vertebrata) | 7.65e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
retina | 1.85e-17 | 6 |
photoreceptor array | 1.85e-17 | 6 |
posterior segment of eyeball | 1.85e-17 | 6 |
eye | 2.70e-11 | 21 |
visual system | 2.70e-11 | 21 |
sense organ | 5.74e-10 | 24 |
sensory system | 5.74e-10 | 24 |
entire sense organ system | 5.74e-10 | 24 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 6.94e-11 | 10 |
germ cell and embryonal cancer | 7.16e-11 | 22 |
germ cell cancer | 7.16e-11 | 22 |
nervous system cancer | 2.55e-09 | 11 |