FFCP PHASE1:Hg19::chr20:17349884..17349887,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr20:17349884..17349887,+ | |||
|coexpression_cluster_id=C4014 | |||
|description=CAGE_peak_at_chr20:17349884..17349887,+ | |||
|id=chr20:17349884..17349887,+ | |||
|ontology_enrichment_celltype=CL:0000242!2.92e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000123;2.72e-10;2!CL:0000242;2.72e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,2.72e-10,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!7.13e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:171;4.98e-17;10!DOID:3095;4.44e-08;22!DOID:2994;4.44e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,4.47e-17,10;DOID:3095,4.23e-08,22;DOID:2994,4.23e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.06e-29!57;UBERON:0005068!2.06e-29!57;UBERON:0006241!2.06e-29!57;UBERON:0007135!2.06e-29!57;UBERON:0002780!7.16e-29!41;UBERON:0001890!7.16e-29!41;UBERON:0006240!7.16e-29!41;UBERON:0003080!4.35e-28!42;UBERON:0002020!6.58e-28!34;UBERON:0003528!6.58e-28!34;UBERON:0002346!1.33e-26!90;UBERON:0001869!2.10e-26!32;UBERON:0002616!1.15e-25!59;UBERON:0002791!1.64e-25!33;UBERON:0001893!1.14e-24!34;UBERON:0005743!4.69e-23!86;UBERON:0000955!6.33e-23!69;UBERON:0006238!6.33e-23!69;UBERON:0001017!2.31e-22!82;UBERON:0007023!2.32e-22!115;UBERON:0000073!2.80e-22!94;UBERON:0001016!2.80e-22!94;UBERON:0002619!6.27e-22!22;UBERON:0003075!1.84e-21!86;UBERON:0007284!1.84e-21!86;UBERON:0003056!3.46e-20!61;UBERON:0000956!4.34e-19!25;UBERON:0000203!4.34e-19!25;UBERON:0001950!8.86e-17!20;UBERON:0000924!5.87e-15!173;UBERON:0006601!5.87e-15!173;UBERON:0000033!5.17e-13!123;UBERON:0000349!1.43e-12!5;UBERON:0001871!2.32e-12!7;UBERON:0000153!3.81e-12!129;UBERON:0007811!3.81e-12!129;UBERON:0004121!7.61e-12!169;UBERON:0002420!9.06e-11!9;UBERON:0007245!9.06e-11!9;UBERON:0010009!9.06e-11!9;UBERON:0010011!9.06e-11!9;UBERON:0000454!9.06e-11!9;UBERON:0002308!2.02e-10!9;UBERON:0000125!2.02e-10!9;UBERON:0000369!3.57e-09!4;UBERON:0002435!3.57e-09!4;UBERON:0000204!3.57e-09!4;UBERON:0010082!3.57e-09!4;UBERON:0009663!5.04e-09!7;UBERON:0001905!7.28e-09!2;UBERON:0002757!7.28e-09!2;UBERON:0010134!7.28e-09!2;UBERON:0002784!7.28e-09!2;UBERON:0005408!7.28e-09!2;UBERON:0001899!7.28e-09!2;UBERON:0001954!1.03e-08!2;UBERON:0003022!1.03e-08!2;UBERON:0002421!1.03e-08!2;UBERON:0002600!1.03e-08!2;UBERON:0000025!1.29e-08!194;UBERON:0001872!1.38e-07!5;UBERON:0000483!4.66e-07!309;UBERON:0000119!6.43e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0001871;9.76e-24;6!UBERON:0002346;2.47e-19;4!UBERON:0000923;2.47e-19;4!UBERON:0010316;2.47e-19;4!UBERON:0005291;2.47e-19;4!UBERON:0002050;1.13e-15;5!UBERON:0005423;1.13e-15;5!UBERON:0001950;4.76e-14;20!UBERON:0002619;7.36e-13;22!UBERON:0000956;2.04e-11;25!UBERON:0000203;2.04e-11;25!UBERON:0001876;1.89e-10;2!UBERON:0002771;2.72e-10;2!UBERON:0002791;2.89e-09;32!UBERON:0001869;2.89e-09;32!UBERON:0001893;9.38e-09;34!UBERON:0003528;7.44e-07;34!UBERON:0002020;7.44e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001871,1.06e-23,6;UBERON:0001950,5.46e-14,20;UBERON:0002619,8.33e-13,22;UBERON:0000956,2.28e-11,25;UBERON:0000203,2.28e-11,25;UBERON:0001876,1.89e-10,2;UBERON:0002771,3.27e-10,2;UBERON:0002791,5.03e-09,32;UBERON:0001869,5.03e-09,32;UBERON:0003528,1.59e-08,34;UBERON:0002020,1.59e-08,34;UBERON:0001893,1.59e-08,34;UBERON:0002346,2.54e-07,86;UBERON:0002780,3.77e-07,41;UBERON:0001890,3.77e-07,41;UBERON:0003080,3.77e-07,41;UBERON:0006240,3.77e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98244294329889,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0.583209226766509,0,0.885741385813839,0,0,0.221158519862449,0,0.438770794307945,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702793337176017,0,0,0,0,0,1.53036380815245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,1.71594997861965,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09823638411767,0.250381861413,0,0,0,0,0,0,0,0,1.40500471742064,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57265941855896,0,0,5.73952284274544,3.09839410647505,0,0,0,0,0,0,0.0642292250964595,0,0,1.02558182120378,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620060389503552,0,0.546974809018219,0,0,0.879356221798103,0,0.535701835878287,0.336283722218824,0,0,0,0,0,0.0679697329768317,0.197318320688547,0,0,0,0.314231179832004,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0.219881033490858,0.150962843566674,0.0771741581079447,0,4.23285566725371,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0.25458863311266,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr20:17349884..17349887,+ | |||
}} |
Latest revision as of 12:04, 28 July 2015
Short description: | p@chr20:17349884..17349887, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:17349884..17349887, + |
Coexpression cluster: | C4014_neuroectodermal_neuroblastoma_smallcell_gastrointestinal_peripheral_thyroid_pineal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 2.72e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
temporal lobe | 1.06e-23 | 6 |
neocortex | 5.46e-14 | 20 |
regional part of cerebral cortex | 8.33e-13 | 22 |
cerebral cortex | 2.28e-11 | 25 |
pallium | 2.28e-11 | 25 |
amygdala | 1.89e-10 | 2 |
middle temporal gyrus | 3.27e-10 | 2 |
regional part of telencephalon | 5.03e-09 | 32 |
cerebral hemisphere | 5.03e-09 | 32 |
brain grey matter | 1.59e-08 | 34 |
gray matter | 1.59e-08 | 34 |
telencephalon | 1.59e-08 | 34 |
neurectoderm | 2.54e-07 | 86 |
regional part of forebrain | 3.77e-07 | 41 |
forebrain | 3.77e-07 | 41 |
anterior neural tube | 3.77e-07 | 41 |
future forebrain | 3.77e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 4.47e-17 | 10 |
germ cell and embryonal cancer | 4.23e-08 | 22 |
germ cell cancer | 4.23e-08 | 22 |