FFCP PHASE1:Hg19::chr20:54998171..54998186,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:54998171..54998186,+ | |||
|coexpression_cluster_id=C163 | |coexpression_cluster_id=C163 | ||
|description=CAGE_peak_at_chr20:54998171..54998186,+ | |description=CAGE_peak_at_chr20:54998171..54998186,+ | ||
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|ontology_enrichment_celltype=CL:0000188!1.97e-25!9;CL:0000183!1.74e-13!59;CL:0000187!3.93e-13!54;CL:0000680!3.07e-12!57;CL:0000056!3.07e-12!57;CL:0000355!3.07e-12!57;CL:0000393!1.94e-11!60;CL:0000211!1.94e-11!60;CL:0000594!2.36e-11!3;CL:0000222!3.88e-08!119 | |ontology_enrichment_celltype=CL:0000188!1.97e-25!9;CL:0000183!1.74e-13!59;CL:0000187!3.93e-13!54;CL:0000680!3.07e-12!57;CL:0000056!3.07e-12!57;CL:0000355!3.07e-12!57;CL:0000393!1.94e-11!60;CL:0000211!1.94e-11!60;CL:0000594!2.36e-11!3;CL:0000222!3.88e-08!119 | ||
|ontology_enrichment_celltype_v019=CL:0002575;7.30e-14;2!CL:0002097;1.29e-13;2!CL:0000188;4.80e-12;9!CL:0000632;1.24e-09;3!CL:0000174;1.60e-09;3!CL:0000322;1.60e-09;3!CL:0000669;1.40e-07;4 | |ontology_enrichment_celltype_v019=CL:0002575;7.30e-14;2!CL:0002097;1.29e-13;2!CL:0000188;4.80e-12;9!CL:0000632;1.24e-09;3!CL:0000174;1.60e-09;3!CL:0000322;1.60e-09;3!CL:0000669;1.40e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002575,7.30e-14,2;CL:0002097,1.55e-13,2;CL:0000188,4.42e-12,9;CL:0000632,1.19e-09,3;CL:0000322,1.67e-09,3;CL:0000174,1.81e-09,3;CL:0000669,1.40e-07,4 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3910;1.29e-13;2!DOID:1324;1.59e-07;15!DOID:0050615;4.14e-07;16 | |ontology_enrichment_disease_v019=DOID:3910;1.29e-13;2!DOID:1324;1.59e-07;15!DOID:0050615;4.14e-07;16 | ||
|ontology_enrichment_disease_v019_2=DOID:3910,1.37e-13,2;DOID:1324,1.59e-07,15;DOID:0050615,4.14e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0001134!1.51e-14!61;UBERON:0002036!1.51e-14!61;UBERON:0003082!1.51e-14!61;UBERON:0002385!6.03e-14!63;UBERON:0001015!6.03e-14!63;UBERON:0000383!6.03e-14!63;UBERON:0004290!4.09e-12!70;UBERON:0000914!8.96e-11!83;UBERON:0002329!8.96e-11!83;UBERON:0003077!8.96e-11!83;UBERON:0003059!8.96e-11!83;UBERON:0007282!8.96e-11!83;UBERON:0009618!8.96e-11!83;UBERON:0007285!8.96e-11!83;UBERON:0000486!1.01e-09!82 | |ontology_enrichment_uberon=UBERON:0001134!1.51e-14!61;UBERON:0002036!1.51e-14!61;UBERON:0003082!1.51e-14!61;UBERON:0002385!6.03e-14!63;UBERON:0001015!6.03e-14!63;UBERON:0000383!6.03e-14!63;UBERON:0004290!4.09e-12!70;UBERON:0000914!8.96e-11!83;UBERON:0002329!8.96e-11!83;UBERON:0003077!8.96e-11!83;UBERON:0003059!8.96e-11!83;UBERON:0007282!8.96e-11!83;UBERON:0009618!8.96e-11!83;UBERON:0007285!8.96e-11!83;UBERON:0000486!1.01e-09!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0001134;1.11e-14;16!UBERON:0002036;1.11e-14;16!UBERON:0004903;1.29e-13;2!UBERON:0002173;1.29e-13;2!UBERON:0002186;1.29e-13;2!UBERON:0002369;1.60e-09;3!UBERON:0004821;1.60e-09;3!UBERON:0001235;1.60e-09;3!UBERON:0007499;1.60e-09;3!UBERON:0003215;1.60e-09;3!UBERON:0006858;1.60e-09;3!UBERON:0010368;1.60e-09;3!UBERON:0009911;1.60e-09;3!UBERON:0002299;1.60e-09;3!UBERON:0006524;1.60e-09;3!UBERON:0008874;1.60e-09;3!UBERON:0002169;1.60e-09;3!UBERON:0004894;1.60e-09;3!UBERON:0002385;9.51e-08;31!UBERON:0001015;9.51e-08;31!UBERON:0000383;9.51e-08;31!UBERON:0009856;1.86e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0001134;1.11e-14;16!UBERON:0002036;1.11e-14;16!UBERON:0004903;1.29e-13;2!UBERON:0002173;1.29e-13;2!UBERON:0002186;1.29e-13;2!UBERON:0002369;1.60e-09;3!UBERON:0004821;1.60e-09;3!UBERON:0001235;1.60e-09;3!UBERON:0007499;1.60e-09;3!UBERON:0003215;1.60e-09;3!UBERON:0006858;1.60e-09;3!UBERON:0010368;1.60e-09;3!UBERON:0009911;1.60e-09;3!UBERON:0002299;1.60e-09;3!UBERON:0006524;1.60e-09;3!UBERON:0008874;1.60e-09;3!UBERON:0002169;1.60e-09;3!UBERON:0004894;1.60e-09;3!UBERON:0002385;9.51e-08;31!UBERON:0001015;9.51e-08;31!UBERON:0000383;9.51e-08;31!UBERON:0009856;1.86e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.37e-13,2;UBERON:0002173,1.37e-13,2;UBERON:0002186,1.37e-13,2;UBERON:0004821,1.67e-09,3;UBERON:0003215,1.67e-09,3;UBERON:0010368,1.67e-09,3;UBERON:0009911,1.67e-09,3;UBERON:0002299,1.67e-09,3;UBERON:0006524,1.67e-09,3;UBERON:0008874,1.67e-09,3;UBERON:0002169,1.67e-09,3;UBERON:0004894,1.67e-09,3;UBERON:0002369,1.81e-09,3;UBERON:0001235,1.81e-09,3;UBERON:0006858,1.81e-09,3 | |||
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| ||
|short_description=p@chr20:54998171..54998186,+ | |short_description=p@chr20:54998171..54998186,+ | ||
}} | }} |
Latest revision as of 15:38, 28 July 2015
Short description: | p@chr20:54998171..54998186, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:54998171..54998186, + |
Coexpression cluster: | C163_Skeletal_skeletal_Pericytes_Hepatic_rhabdomyosarcoma_throat_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 7.30e-14 | 2 |
cortical cell of adrenal gland | 1.55e-13 | 2 |
cell of skeletal muscle | 4.42e-12 | 9 |
hepatic stellate cell | 1.19e-09 | 3 |
pneumocyte | 1.67e-09 | 3 |
steroid hormone secreting cell | 1.81e-09 | 3 |
pericyte cell | 1.40e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.37e-13 | 2 |
alveolar duct | 1.37e-13 | 2 |
bronchiole | 1.37e-13 | 2 |
pulmonary alveolus epithelium | 1.67e-09 | 3 |
alveolus | 1.67e-09 | 3 |
pulmonary lobule | 1.67e-09 | 3 |
lobule | 1.67e-09 | 3 |
alveolus of lung | 1.67e-09 | 3 |
alveolar system | 1.67e-09 | 3 |
pulmonary acinus | 1.67e-09 | 3 |
alveolar sac | 1.67e-09 | 3 |
alveolar wall | 1.67e-09 | 3 |
adrenal gland | 1.81e-09 | 3 |
adrenal cortex | 1.81e-09 | 3 |
adrenal/interrenal gland | 1.81e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 1.37e-13 | 2 |
lung cancer | 1.59e-07 | 15 |
respiratory system cancer | 4.14e-07 | 16 |