FFCP PHASE1:Hg19::chr20:9495125..9495132,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=24141 | |EntrezGene=entrezgene:24141 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=16097 | |HGNC=HGNC:16097 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=Q9UJQ1 | |UniProt=uniprot:Q9UJQ1 | ||
|association_with_transcript=117bp_to_ENST00000246070_5end | |association_with_transcript=117bp_to_ENST00000246070_5end | ||
|cluster_id=chr20:9495125..9495132,+ | |||
|coexpression_cluster_id=C35 | |coexpression_cluster_id=C35 | ||
|description=CAGE_peak_17_at_LAMP5_5end | |description=CAGE_peak_17_at_LAMP5_5end | ||
Revision as of 16:39, 28 July 2015
| Short description: | p17@LAMP5 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_17_at_LAMP5_5end |
| Coexpression cluster: | C35_caudate_putamen_diencephalon_nucleus_globus_thalamus_insula |
| Association with transcript: | 117bp_to_ENST00000246070_5end |
| EntrezGene: | 24141 |
| HGNC: | 16097 |
| UniProt: | Q9UJQ1 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p17@LAMP5 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| corpus striatum | 1.33e-112 | 4 |
| striatum | 1.33e-112 | 4 |
| ventral part of telencephalon | 1.33e-112 | 4 |
| future corpus striatum | 1.33e-112 | 4 |
| telencephalic nucleus | 2.97e-100 | 7 |
| caudate-putamen | 2.28e-85 | 3 |
| dorsal striatum | 2.28e-85 | 3 |
| basal ganglion | 3.75e-78 | 9 |
| neural nucleus | 3.75e-78 | 9 |
| nuclear complex of neuraxis | 3.75e-78 | 9 |
Showing 1 to 10 of 48 entries
