FFCP PHASE1:Hg19::chr2:176970198..176970230,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:176970198..176970230,+ | |||
|coexpression_cluster_id=C4148 | |||
|description=CAGE_peak_at_chr2:176970198..176970230,+ | |||
|id=chr2:176970198..176970230,+ | |||
|ontology_enrichment_celltype=CL:0002620!1.01e-09!23;CL:1000449!3.38e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.24e-10;10!CL:1000494;1.24e-10;10!CL:1000449;1.66e-10;15!CL:0002620;4.11e-10;23!CL:1000497;5.14e-09;17!CL:0002518;5.14e-09;17!CL:0002681;6.02e-07;12!CL:0002584;6.02e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.30e-10,10;CL:1000494,1.30e-10,10;CL:1000449,1.77e-10,15;CL:0002620,4.07e-10,23;CL:1000497,5.43e-09,17;CL:0002518,5.43e-09,17;CL:0002681,6.63e-07,12;CL:0002584,6.63e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.42e-08!14;DOID:17!3.20e-08!5;DOID:450!3.20e-08!5;DOID:66!3.20e-08!5;DOID:423!3.20e-08!5;DOID:0080000!3.20e-08!5;DOID:11722!3.20e-08!5;DOID:171!2.28e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:17;1.92e-10;5!DOID:450;1.92e-10;5!DOID:66;1.92e-10;5!DOID:423;1.92e-10;5!DOID:0080000;1.92e-10;5!DOID:11722;1.92e-10;5!DOID:1749;1.75e-09;14!DOID:171;9.33e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.94e-10,5;DOID:450,1.94e-10,5;DOID:66,1.94e-10,5;DOID:423,1.94e-10,5;DOID:0080000,1.94e-10,5;DOID:11722,1.94e-10,5;DOID:1749,1.70e-09,14;DOID:171,9.34e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0006554!2.49e-17!44;UBERON:0001008!9.45e-17!45;UBERON:0003064!2.02e-12!37;UBERON:0000489!3.68e-11!32;UBERON:0002113!1.03e-09!27;UBERON:0003918!1.03e-09!27;UBERON:0005095!1.03e-09!27;UBERON:0007687!1.03e-09!27;UBERON:0005156!2.00e-09!59;UBERON:0000990!2.00e-09!59;UBERON:0004876!2.92e-09!20;UBERON:0000059!6.04e-09!11;UBERON:0000080!7.46e-09!18;UBERON:0002120!7.46e-09!18;UBERON:0004875!7.46e-09!18;UBERON:0005721!7.46e-09!18;UBERON:0005754!7.46e-09!18;UBERON:0007297!7.46e-09!18;UBERON:0001155!9.32e-09!9;UBERON:0006555!5.75e-08!17;UBERON:0005103!5.75e-08!17;UBERON:0000083!5.75e-08!17;UBERON:0009201!5.75e-08!17;UBERON:0004819!5.75e-08!17;UBERON:0006553!5.75e-08!17;UBERON:0003074!5.75e-08!17;UBERON:0003060!5.75e-08!17;UBERON:0001046!8.12e-08!19;UBERON:0004211!3.38e-07!16;UBERON:0001285!3.38e-07!16;UBERON:0007684!3.38e-07!16;UBERON:0003220!3.38e-07!16;UBERON:0004208!3.38e-07!16;UBERON:0003887!3.71e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.60e-17;30!UBERON:0001008;1.60e-17;30!UBERON:0000489;3.46e-14;29!UBERON:0002113;5.08e-12;24!UBERON:0011143;5.08e-12;24!UBERON:0004211;1.24e-10;10!UBERON:0009773;1.24e-10;10!UBERON:0001231;1.24e-10;10!UBERON:0004810;1.24e-10;10!UBERON:0006555;1.66e-10;15!UBERON:0004819;1.66e-10;15!UBERON:0001285;1.66e-10;15!UBERON:0007684;1.66e-10;15!UBERON:0000059;1.81e-09;11!UBERON:0001155;6.39e-09;9!UBERON:0005910;5.76e-08;6!UBERON:0002050;1.22e-07;5!UBERON:0005423;1.22e-07;5!UBERON:0001225;6.02e-07;12!UBERON:0008987;6.02e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,1.07e-17,47;UBERON:0001008,3.51e-17,48;UBERON:0000489,1.40e-14,31;UBERON:0002113,1.81e-12,26;UBERON:0003918,1.81e-12,26;UBERON:0011143,1.81e-12,26;UBERON:0005095,1.81e-12,26;UBERON:0007687,1.81e-12,26;UBERON:0004810,1.30e-10,10;UBERON:0004211,1.77e-10,15;UBERON:0009773,1.77e-10,15;UBERON:0001231,1.77e-10,15;UBERON:0001285,1.77e-10,15;UBERON:0007684,1.77e-10,15;UBERON:0004208,1.77e-10,15;UBERON:0006555,1.09e-09,16;UBERON:0004819,1.09e-09,16;UBERON:0000059,1.72e-09,11;UBERON:0001155,6.02e-09,9;UBERON:0003064,1.43e-08,28;UBERON:0005910,6.82e-08,6;UBERON:0001046,1.10e-07,19;UBERON:0001225,6.63e-07,12;UBERON:0008987,6.63e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03017567021455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352303495931295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.0076929667506,25.199771880591,18.0142115985628,4.50136644126603,3.60683852334536,1.8034837803194,0.930584281657949,0,0,33.3212582002231,25.4057720252746,0,35.8559688441781,18.0346255827476,5.59549954624609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0,0,0,0.205654985406647,0.300343057843917,0,0,0,0,0.387815147273333,0,0,29.5191309409206,16.6411899058186,0,0,0,0,1.62786481617433,3.29296134712308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,8.12554469264841,0,0,0,10.5090426068771,0.781952530212746,0,0,0,0,0,0,0,0.604780586659361,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0,5.41367469818869,4.32780647998713,0.229628896329213,0,1.70461739447251,1.35359883872224,2.31046011313244,3.92174884588428,1.46139224653261,3.37765212457202,0,0,4.10240240594065,6.16909010761157,18.424357752982,18.0608318587747,0,0,4.02974558499921,0,0,0,0,0,0.103041011647722,0,0,0,0,0,2.41676795730305,0,0,0,0.107420244868274,0,0,1.78064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,5.03642881233281,4.11805544604082,2.47406044925942,0,0,0,0,0,0,6.27899592476734,0.141405431953713,0,0,0,0,0,0,0.202910376962704,1.239293992399,0.845086807596724,1.29070216983646,1.8667317792493,0,3.54761064070598,0,0,0,0,0,0,0,0.188287601553558,3.01353760869861,0,5.32116184244011,3.44585100310439,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0.818149460017238,0,0,0,0,0,1.1837208676432,0,0,0,0,0,0,0,0,0,0,0,0,1.74962768029953,0,0,0,0,0,0,0,0,4.74040730547251,4.61701551022782,0,0,0,0,0,12.8236630762607,0,0,0,0,0,0,0,0,0,0.632994193584081,0,0,2.16388639742091,3.98104772431402,0.619202951523374,4.888241159469,0.296521128680622,3.21266241260907,1.98401704060365,0,0,0,0,0,0,0,0,0,0,3.15679180770434,7.05079701501281,2.65861549082874,0,0.627865836814451,0,0,0,0,4.01768829398948,7.40003255933422,0.873633341210151,0,0,0,0,0,0,0,4.38534158869603,0,0,0.195551382734803,0,0,0.19980960958213,0,0,0.171594997861965,0,15.1588093389828,7.07082103850386,33.0247220758882,35.146556360944,3.36594118199862,5.20111061822734,0,0,0,0,11.8299309425692,0,0,0,0.998395002494955,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0,0,1.73372556058236,33.5709364063988,0,0,4.03021914370835,0,0,0,21.7199840701485,10.3706578944152,0,0,0,11.7567735031941,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83004754662109,0,0,0,0,0,0,0,0,0,0,0,0,7.24886366180218,0,0,0,0,5.07223600137888,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,25.565508028775,0,1.52322084867518,0,0,0,0,19.5066985462322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63804924423206,0,0,0,0,0,1.13503190713367,0,0,0,0,36.7682606862685,44.034463719651,0,31.2307855115406,111.17668321318,52.3008925172989,13.9661229493311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.7517007153791,6.05314375121541,5.54523197521623,0,0,0,0.376051641746286,0,0,0,0,0,0,0,0,0,0,0,10.4204347461752,0.175871244359621,3.83287282918786,0,0,0,0,0.887023701626388,0,0,0,0,0,0,3.76766845682467,0,0,13.6973808076424,0,0,0,0,0,31.4683472867669,3.20684545892101,0,0,0.691259661814092,0,0,0,2.54032230114557,0,0,0,0,0,0,0,0,0,0.971421986118279,16.8436413692716,0,0,0,0,0,0,0,0.470317296361523,0.245148321753905,0,0,0,1.2679671827502,0.169927114687817,0,0,0,3.74963271071881,0.352894871715692,0,0,0,0,10.255151542557,0,0,0,0,0,0,0,0,0,0,0,0.643264296743914,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4778608741474,7.04400482792922,48.268070571735,0,0,9.65707409044645,16.6827433109453,0,0,0 | |||
|short_description=p@chr2:176970198..176970230,+ | |||
}} |
Latest revision as of 02:45, 29 July 2015
Short description: | p@chr2:176970198..176970230, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:176970198..176970230, + |
Coexpression cluster: | C4148_neuroectodermal_Fibroblast_neuroblastoma_glioblastoma_tridermal_rhabdomyosarcoma_kidney |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.30e-10 | 10 |
nephron tubule epithelial cell | 1.30e-10 | 10 |
epithelial cell of nephron | 1.77e-10 | 15 |
skin fibroblast | 4.07e-10 | 23 |
kidney cell | 5.43e-09 | 17 |
kidney epithelial cell | 5.43e-09 | 17 |
kidney cortical cell | 6.63e-07 | 12 |
renal cortical epithelial cell | 6.63e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 1.07e-17 | 47 |
renal system | 3.51e-17 | 48 |
cavitated compound organ | 1.40e-14 | 31 |
kidney | 1.81e-12 | 26 |
kidney mesenchyme | 1.81e-12 | 26 |
upper urinary tract | 1.81e-12 | 26 |
kidney rudiment | 1.81e-12 | 26 |
kidney field | 1.81e-12 | 26 |
nephron tubule epithelium | 1.30e-10 | 10 |
nephron epithelium | 1.77e-10 | 15 |
renal tubule | 1.77e-10 | 15 |
nephron tubule | 1.77e-10 | 15 |
nephron | 1.77e-10 | 15 |
uriniferous tubule | 1.77e-10 | 15 |
nephrogenic mesenchyme | 1.77e-10 | 15 |
excretory tube | 1.09e-09 | 16 |
kidney epithelium | 1.09e-09 | 16 |
large intestine | 1.72e-09 | 11 |
colon | 6.02e-09 | 9 |
intermediate mesoderm | 1.43e-08 | 28 |
transitional epithelium | 6.82e-08 | 6 |
hindgut | 1.10e-07 | 19 |
cortex of kidney | 6.63e-07 | 12 |
renal parenchyma | 6.63e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.94e-10 | 5 |
myotonic disease | 1.94e-10 | 5 |
muscle tissue disease | 1.94e-10 | 5 |
myopathy | 1.94e-10 | 5 |
muscular disease | 1.94e-10 | 5 |
myotonic dystrophy | 1.94e-10 | 5 |
squamous cell carcinoma | 1.70e-09 | 14 |
neuroectodermal tumor | 9.34e-08 | 10 |