FFCP PHASE1:Hg19::chr3:186338441..186338458,+: Difference between revisions
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|id=chr3:186338441..186338458,+
|short_description=p@chr3:186338441..186338458,+
|description=CAGE_peak_at_chr3:186338441..186338458,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:186338441..186338458,+ | |||
|coexpression_cluster_id=C129 | |||
|description=CAGE_peak_at_chr3:186338441..186338458,+ | |||
|id=chr3:186338441..186338458,+ | |||
|ontology_enrichment_celltype=CL:0000181!3.30e-34!12;CL:0000417!3.30e-34!12;CL:0000668!3.30e-34!12;CL:0000414!3.30e-34!12;CL:0000412!3.30e-34!12;CL:0000182!3.30e-34!12;CL:0000223!2.79e-13!59;CL:0002231!8.15e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000182;4.09e-19;12!CL:0002231;1.74e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.22e-19,12;CL:0002231,1.67e-09,3;CL:0000223,3.32e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.03e-10;11!UBERON:0009497;1.04e-08;13!CL:0000223;5.63e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!3.56e-42!19;UBERON:0006925!3.56e-42!19;UBERON:0008836!3.56e-42!19;UBERON:0005057!5.99e-40!26;UBERON:0008835!2.10e-36!22;UBERON:0003894!2.10e-36!22;UBERON:0009854!8.17e-35!23;UBERON:0007499!5.15e-32!25;UBERON:0009497!5.15e-32!25;UBERON:0000015!5.15e-32!25;UBERON:0002423!5.15e-32!25;UBERON:0006235!5.15e-32!25;UBERON:0004161!5.15e-32!25;UBERON:0009856!8.92e-31!26;UBERON:0002365!8.89e-26!31;UBERON:0002330!8.89e-26!31;UBERON:0003929!4.34e-24!54;UBERON:0002368!8.37e-23!35;UBERON:0005172!1.13e-18!55;UBERON:0005173!1.13e-18!55;UBERON:0000949!1.13e-17!45;UBERON:0002530!2.01e-17!59;UBERON:0002417!8.64e-17!61;UBERON:0000916!8.64e-17!61;UBERON:0005911!1.18e-15!82;UBERON:0004921!6.61e-12!129;UBERON:0004185!6.61e-12!129;UBERON:0001041!3.05e-10!98;UBERON:0001007!8.87e-10!155;UBERON:0001555!8.87e-10!155;UBERON:0007026!8.87e-10!155;UBERON:0000077!1.34e-09!130;UBERON:0005177!2.50e-09!107;UBERON:0000490!5.23e-09!138;UBERON:0004119!6.72e-09!169;UBERON:0000925!6.72e-09!169;UBERON:0006595!6.72e-09!169;UBERON:0009569!8.44e-09!113;UBERON:0002405!1.48e-08!115;UBERON:0000466!7.96e-08!126;UBERON:0005256!7.80e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.02e-32;19!UBERON:0006925;1.02e-32;19!UBERON:0002423;5.64e-25;25!UBERON:0002365;3.73e-20;31!UBERON:0002330;3.73e-20;31!UBERON:0002368;1.97e-17;33!UBERON:0000949;1.18e-12;43!UBERON:0002530;7.65e-10;57!UBERON:0005172;3.73e-09;52!UBERON:0005173;3.73e-09;52!UBERON:0002417;4.17e-07;58!UBERON:0000916;4.17e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.05e-32,19;UBERON:0006925,1.05e-32,19;UBERON:0008836,1.05e-32,19;UBERON:0008835,2.61e-28,22;UBERON:0003894,2.61e-28,22;UBERON:0009854,4.25e-27,23;UBERON:0007499,5.78e-25,25;UBERON:0009497,5.78e-25,25;UBERON:0000015,5.78e-25,25;UBERON:0002423,5.78e-25,25;UBERON:0006235,5.78e-25,25;UBERON:0004161,5.78e-25,25;UBERON:0009856,5.08e-24,26;UBERON:0002365,3.29e-20,31;UBERON:0002330,3.29e-20,31;UBERON:0002368,6.10e-18,35;UBERON:0003929,1.35e-16,54;UBERON:0002530,3.33e-15,59;UBERON:0000949,5.03e-14,45;UBERON:0005172,9.86e-12,54;UBERON:0005173,9.86e-12,54;UBERON:0005911,5.67e-11,82;UBERON:0002417,1.39e-10,60;UBERON:0000916,1.39e-10,60;UBERON:0004921,1.43e-07,118;UBERON:0005256,2.20e-07,122;UBERON:0001041,2.36e-07,87 | |||
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|short_description=p@chr3:186338441..186338458,+ | |||
}} | }} |
Latest revision as of 19:06, 29 July 2015
Short description: | p@chr3:186338441..186338458, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:186338441..186338458, + |
Coexpression cluster: | C129_liver_Hepatocyte_colon_duodenum_temporal_testicular_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.22e-19 | 12 |
epithelial cell of prostate | 1.67e-09 | 3 |
endodermal cell | 3.32e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 1.05e-32 | 19 |
digestive gland | 1.05e-32 | 19 |
liver bud | 1.05e-32 | 19 |
hepatic diverticulum | 2.61e-28 | 22 |
liver primordium | 2.61e-28 | 22 |
digestive tract diverticulum | 4.25e-27 | 23 |
epithelial sac | 5.78e-25 | 25 |
epithelium of foregut-midgut junction | 5.78e-25 | 25 |
anatomical boundary | 5.78e-25 | 25 |
hepatobiliary system | 5.78e-25 | 25 |
foregut-midgut junction | 5.78e-25 | 25 |
septum transversum | 5.78e-25 | 25 |
sac | 5.08e-24 | 26 |
exocrine gland | 3.29e-20 | 31 |
exocrine system | 3.29e-20 | 31 |
endocrine gland | 6.10e-18 | 35 |
gut epithelium | 1.35e-16 | 54 |
gland | 3.33e-15 | 59 |
endocrine system | 5.03e-14 | 45 |
abdomen element | 9.86e-12 | 54 |
abdominal segment element | 9.86e-12 | 54 |
endo-epithelium | 5.67e-11 | 82 |
abdominal segment of trunk | 1.39e-10 | 60 |
abdomen | 1.39e-10 | 60 |
subdivision of digestive tract | 1.43e-07 | 118 |
trunk mesenchyme | 2.20e-07 | 122 |
foregut | 2.36e-07 | 87 |