FFCP PHASE1:Hg19::chr4:141188244..141188291,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:141188244..141188291,+ | |||
|description=CAGE_peak_at_chr4:141188244..141188291,+ | |description=CAGE_peak_at_chr4:141188244..141188291,+ | ||
|id=chr4:141188244..141188291,+ | |id=chr4:141188244..141188291,+ | ||
|ontology_enrichment_celltype=CL:0000349;1.45e-26;19!CL:0000197;5.90e-16;6!CL:0000098;5.90e-16;6!CL:0002167;5.90e-16;6!CL:0002537;6.20e-13;5!CL:0002577;1.43e-11;3!CL:0002536;5.39e-09;2!CL:0002600;2.86e-08;2!CL:0000075;1.02e-07;27 | |ontology_enrichment_celltype=CL:0000197!7.09e-08!6;CL:0000098!7.09e-08!6;CL:0002167!7.09e-08!6;CL:1000507!1.20e-07!12;CL:1000494!1.20e-07!12 | ||
| | |ontology_enrichment_celltype_v019=CL:0000349;1.45e-26;19!CL:0000197;5.90e-16;6!CL:0000098;5.90e-16;6!CL:0002167;5.90e-16;6!CL:0002537;6.20e-13;5!CL:0002577;1.43e-11;3!CL:0002536;5.39e-09;2!CL:0002600;2.86e-08;2!CL:0000075;1.02e-07;27 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.52e-26,19;CL:0000197,6.41e-16,6;CL:0000098,6.41e-16,6;CL:0002167,6.41e-16,6;CL:0002537,8.55e-13,5;CL:0002577,1.19e-11,3;CL:0002536,5.51e-09,2;CL:0002600,2.42e-08,2;CL:0000075,1.17e-07,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0005631;5.11e-24;10!UBERON:0000158;5.11e-24;10!UBERON:0000478;1.87e-20;24!UBERON:0000305;5.69e-20;7!UBERON:0001987;8.65e-09;4 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.59e-19!14;UBERON:0000158!2.59e-19!14;UBERON:0000478!5.54e-15!24;UBERON:0003124!2.35e-11!7;UBERON:0002200!6.65e-10!11;UBERON:0006876!6.65e-10!11;UBERON:0000305!1.21e-09!7;UBERON:0004871!2.72e-08!8;UBERON:0009773!1.20e-07!12;UBERON:0001231!1.20e-07!12;UBERON:0004810!1.20e-07!12;UBERON:0001801!1.44e-07!14;UBERON:0000970!3.47e-07!20;UBERON:0001987!5.47e-07!4;UBERON:0004340!5.47e-07!4;UBERON:0002104!9.98e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.11e-24;10!UBERON:0000158;5.11e-24;10!UBERON:0000478;1.87e-20;24!UBERON:0000305;5.69e-20;7!UBERON:0001987;8.65e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.09e-31,14;UBERON:0000158,5.09e-31,14;UBERON:0000478,1.93e-20,24;UBERON:0000305,8.17e-20,7;UBERON:0004871,2.99e-17,8;UBERON:0003124,3.16e-13,7;UBERON:0001987,7.57e-09,4;UBERON:0004340,7.57e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,5.46103430325431,6.06664049925443,0.74259811776028,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08371286321253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.189069634328136,0.443458794925128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0.605429710579726,0,5.85803579584492,0.312160076830321,0,0,0.117434498643765,0,0,0.204154171254893,0.368502951935304,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.67824236924195,0.193260853163297,0,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0.977424915930974,1.03993478527958,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00917975910825,0.43596006883328,0.51336800074665,2.84397774667111,0,0,0,1.04007436911366,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,8.11086359970148,9.27830741745241,15.9279439184274,1.40569697991256,0,0,0,0,0,0.0868836144680828,1.17480694477644,0.686286847621712,0,0,0,1.21251028578504,1.66435439510497,4.83824469327489,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0.131124414959424,1.35359883872224,0.231046011313244,0.784349769176855,1.46139224653261,0.633309773357254,0,0,0.215915916102139,0,2.16757150035082,0,0,0,1.11937377361089,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744316738719335,2.53103539774981,0.190630193923825,0.255897791311334,0.855877976067841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89387767133344,1.31178950409327,0,0,0,1.14729081763241,0.589494246078727,0,0,0,0,0.75894634753143,2.0996083214699,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,8.11731248108146,26.4298565941048,15.9723565091601,0,0,2.11486539543521,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0.718946809178615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.341826167541004,0,0.538545866458633,0,3.82801391678303,2.47313502185028,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,1.32930774541437,2.97892760287949,0.941798755221676,0,0,0.554698692052555,0,0,0,0,0,0,0,0.0821154570532092,0,0,2.25980740780532,8.63364125274531,1.9871461170299,0,0,0.160317640503067,0,1.19885765749278,0,0,0,0,1.61528296235062,0,0.407712618220842,0.104602846312333,0,1.73370353940911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75201514337329,0,2.30298236783334,0,0,2.79695391420225,0,0,0,3.59190574687462,0,0,0,0,0,0,0,0,4.22889013390003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11739237728355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0.398095888698616,0.400027764663154,0.343395705182793,0,0,0,0,0,0.226705925512272,0.926089897295336,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,11.5513267114248,0,0,0,0,8.51273930350254,0,0,1.24415452006595,0,0.107824811396682,0,0,0,0,0,0,0,0,0,1.76337971845342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31017534008077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682986574053893,0.0887023701626388,0,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.75584492686706,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41157948686277,0,0,0,0,0,0,0,0,0,0,0,0.630832124175395,0,0.253397002022874,0.305966489225945,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0.0673520530145875,0,0,0.407016343054873,0.533636729388577,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,5.46103430325431,6.06664049925443,0.74259811776028,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08371286321253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.189069634328136,0.443458794925128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0.605429710579726,0,5.85803579584492,0.312160076830321,0,0,0.117434498643765,0,0,0.204154171254893,0.368502951935304,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.67824236924195,0.193260853163297,0,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0.977424915930974,1.03993478527958,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00917975910825,0.43596006883328,0.51336800074665,2.84397774667111,0,0,0,1.04007436911366,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,8.11086359970148,9.27830741745241,15.9279439184274,1.40569697991256,0,0,0,0,0,0.0868836144680828,1.17480694477644,0.686286847621712,0,0,0,1.21251028578504,1.66435439510497,4.83824469327489,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0.131124414959424,1.35359883872224,0.231046011313244,0.784349769176855,1.46139224653261,0.633309773357254,0,0,0.215915916102139,0,2.16757150035082,0,0,0,1.11937377361089,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744316738719335,2.53103539774981,0.190630193923825,0.255897791311334,0.855877976067841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89387767133344,1.31178950409327,0,0,0,1.14729081763241,0.589494246078727,0,0,0,0,0.75894634753143,2.0996083214699,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,8.11731248108146,26.4298565941048,15.9723565091601,0,0,2.11486539543521,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0.718946809178615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.341826167541004,0,0.538545866458633,0,3.82801391678303,2.47313502185028,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,1.32930774541437,2.97892760287949,0.941798755221676,0,0,0.554698692052555,0,0,0,0,0,0,0,0.0821154570532092,0,0,2.25980740780532,8.63364125274531,1.9871461170299,0,0,0.160317640503067,0,1.19885765749278,0,0,0,0,1.61528296235062,0,0.407712618220842,0.104602846312333,0,1.73370353940911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75201514337329,0,2.30298236783334,0,0,2.79695391420225,0,0,0,3.59190574687462,0,0,0,0,0,0,0,0,4.22889013390003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11739237728355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0.398095888698616,0.400027764663154,0.343395705182793,0,0,0,0,0,0.226705925512272,0.926089897295336,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,11.5513267114248,0,0,0,0,8.51273930350254,0,0,1.24415452006595,0,0.107824811396682,0,0,0,0,0,0,0,0,0,1.76337971845342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31017534008077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682986574053893,0.0887023701626388,0,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.75584492686706,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41157948686277,0,0,0,0,0,0,0,0,0,0,0,0.630832124175395,0,0.253397002022874,0.305966489225945,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0.0673520530145875,0,0,0.407016343054873,0.533636729388577,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr4:141188244..141188291,+ | |short_description=p@chr4:141188244..141188291,+ | ||
}} | }} |
Latest revision as of 01:49, 30 July 2015
Short description: | p@chr4:141188244..141188291, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:141188244..141188291, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.52e-26 | 19 |
receptor cell | 6.41e-16 | 6 |
sensory epithelial cell | 6.41e-16 | 6 |
olfactory epithelial cell | 6.41e-16 | 6 |
amnion mesenchymal stem cell | 8.55e-13 | 5 |
placental epithelial cell | 1.19e-11 | 3 |
amniotic epithelial cell | 5.51e-09 | 2 |
smooth muscle cell of trachea | 2.42e-08 | 2 |
columnar/cuboidal epithelial cell | 1.17e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.09e-31 | 14 |
membranous layer | 5.09e-31 | 14 |
extraembryonic structure | 1.93e-20 | 24 |
amnion | 8.17e-20 | 7 |
somatic layer of lateral plate mesoderm | 2.99e-17 | 8 |
chorion | 3.16e-13 | 7 |
placenta | 7.57e-09 | 4 |
allantois | 7.57e-09 | 4 |