FFCP PHASE1:Hg19::chr4:143470541..143470551,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:143470541..143470551,+ | |||
|coexpression_cluster_id=C1136 | |||
|description=CAGE_peak_at_chr4:143470541..143470551,+ | |description=CAGE_peak_at_chr4:143470541..143470551,+ | ||
|id=chr4:143470541..143470551,+ | |id=chr4:143470541..143470551,+ | ||
|ontology_enrichment_celltype=CL:0002621!3.26e-20!3;CL:0002166!5.77e-20!3;CL:0000066!1.39e-13!254;CL:0002159!6.20e-12!13;CL:0002076!2.76e-10!43;CL:0002251!3.69e-10!21;CL:0000240!1.14e-09!6;CL:0000311!1.14e-09!6;CL:0000079!1.14e-09!6;CL:0000237!1.14e-09!6;CL:0000036!1.14e-09!6;CL:0000357!1.14e-09!6;CL:0000114!1.14e-09!6;CL:0000076!5.88e-08!62;CL:1001319!1.95e-07!1;CL:1000600!1.95e-07!1;CL:0002336!2.21e-07!1;CL:0002261!2.21e-07!1;CL:0002170!2.21e-07!1;CL:0000223!4.24e-07!59;CL:0002327!6.65e-07!4 | |ontology_enrichment_celltype=CL:0002621!3.26e-20!3;CL:0002166!5.77e-20!3;CL:0000066!1.39e-13!254;CL:0002159!6.20e-12!13;CL:0002076!2.76e-10!43;CL:0002251!3.69e-10!21;CL:0000240!1.14e-09!6;CL:0000311!1.14e-09!6;CL:0000079!1.14e-09!6;CL:0000237!1.14e-09!6;CL:0000036!1.14e-09!6;CL:0000357!1.14e-09!6;CL:0000114!1.14e-09!6;CL:0000076!5.88e-08!62;CL:1001319!1.95e-07!1;CL:1000600!1.95e-07!1;CL:0002336!2.21e-07!1;CL:0002261!2.21e-07!1;CL:0002170!2.21e-07!1;CL:0000223!4.24e-07!59;CL:0002327!6.65e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002621;4.06e-99;3!CL:0002166;8.26e-98;3!CL:0002159;8.88e-22;14!CL:0002251;1.06e-15;20!CL:0002076;4.66e-08;42!CL:0002077;5.75e-08;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,4.06e-99,3;CL:0002166,8.26e-98,3;CL:0002159,8.88e-22,14;CL:0002251,1.06e-15,20;CL:0002077,1.93e-09,34;CL:0002076,7.23e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!3.57e-20!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!3.26e-20!3;UBERON:0001708!4.12e-15!4;UBERON:0001704!4.12e-15!4;UBERON:0003729!2.66e-11!5;UBERON:0002090!3.09e-10!6;UBERON:0000161!3.93e-10!35;UBERON:0000344!3.60e-08!12;UBERON:0001828!7.14e-08!8;UBERON:0004913!1.42e-07!1;UBERON:0003703!1.42e-07!1;UBERON:0001174!1.42e-07!1;UBERON:0004914!1.42e-07!1;UBERON:0000165!1.78e-07!28;UBERON:0000930!1.78e-07!28;UBERON:0004645!1.95e-07!1;UBERON:0001256!1.95e-07!1;UBERON:0001259!1.95e-07!1;UBERON:0000166!2.89e-07!21;UBERON:0005911!5.53e-07!82;UBERON:0001911!6.65e-07!4;UBERON:0005333!6.65e-07!4;UBERON:0008425!6.65e-07!4;UBERON:0005311!6.65e-07!4;UBERON:0004119!7.41e-07!169;UBERON:0000925!7.41e-07!169;UBERON:0006595!7.41e-07!169;UBERON:0003343!7.95e-07!4;UBERON:0004785!7.95e-07!4 | |ontology_enrichment_uberon=UBERON:0001949!3.26e-20!3;UBERON:0001708!4.12e-15!4;UBERON:0001704!4.12e-15!4;UBERON:0003729!2.66e-11!5;UBERON:0002090!3.09e-10!6;UBERON:0000161!3.93e-10!35;UBERON:0000344!3.60e-08!12;UBERON:0001828!7.14e-08!8;UBERON:0004913!1.42e-07!1;UBERON:0003703!1.42e-07!1;UBERON:0001174!1.42e-07!1;UBERON:0004914!1.42e-07!1;UBERON:0000165!1.78e-07!28;UBERON:0000930!1.78e-07!28;UBERON:0004645!1.95e-07!1;UBERON:0001256!1.95e-07!1;UBERON:0001259!1.95e-07!1;UBERON:0000166!2.89e-07!21;UBERON:0005911!5.53e-07!82;UBERON:0001911!6.65e-07!4;UBERON:0005333!6.65e-07!4;UBERON:0008425!6.65e-07!4;UBERON:0005311!6.65e-07!4;UBERON:0004119!7.41e-07!169;UBERON:0000925!7.41e-07!169;UBERON:0006595!7.41e-07!169;UBERON:0003343!7.95e-07!4;UBERON:0004785!7.95e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;4.06e-99;3!UBERON:0001708;1.16e-73;4!UBERON:0008895;1.16e-73;4!UBERON:0011159;3.67e-59;5!UBERON:0003929;3.92e-43;7!UBERON:0003350;7.14e-38;8!UBERON:0001828;7.14e-38;8!UBERON:0011137;1.84e-27;11!UBERON:0010323;1.84e-27;11!UBERON:0000486;1.41e-25;12!UBERON:0003729;1.10e-23;13!UBERON:0000075;3.61e-19;16!UBERON:0000161;1.75e-16;19!UBERON:0000166;1.75e-16;19!UBERON:0000344;1.06e-15;20!UBERON:0004807;2.38e-14;22!UBERON:0004765;4.09e-12;26!UBERON:0000165;1.92e-11;28!UBERON:0010371;9.89e-11;31!UBERON:0001434;5.08e-09;36!UBERON:0005911;1.36e-08;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,4.06e-99,3;UBERON:0001708,1.16e-73,4;UBERON:0008895,1.16e-73,4;UBERON:0011159,3.67e-59,5;UBERON:0010188,1.73e-49,6;UBERON:0002539,1.73e-49,6;UBERON:0008816,1.73e-49,6;UBERON:0003350,7.14e-38,8;UBERON:0001828,7.14e-38,8;UBERON:0010323,1.84e-27,11;UBERON:0003729,1.11e-23,13;UBERON:0011137,8.88e-22,14;UBERON:0000033,1.37e-21,56;UBERON:0000153,1.49e-19,62;UBERON:0007811,1.49e-19,62;UBERON:0000075,3.61e-19,16;UBERON:0008814,3.90e-17,18;UBERON:0000344,1.06e-15,20;UBERON:0000166,2.38e-14,22;UBERON:0003102,2.00e-12,99;UBERON:0004807,1.92e-11,28;UBERON:0000165,4.48e-11,29;UBERON:0000930,4.48e-11,29;UBERON:0000161,4.60e-09,36;UBERON:0001444,7.75e-07,49 | |||
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|short_description=p@chr4:143470541..143470551,+ | |short_description=p@chr4:143470541..143470551,+ | ||
}} | }} |
Latest revision as of 01:55, 30 July 2015
Short description: | p@chr4:143470541..143470551, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:143470541..143470551, + |
Coexpression cluster: | C1136_Gingival_Mallassezderived_Keratinocyte_Sebocyte_Prostate_keratoacanthoma_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 4.06e-99 | 3 |
epithelial cell of Malassez | 8.26e-98 | 3 |
general ecto-epithelial cell | 8.88e-22 | 14 |
epithelial cell of alimentary canal | 1.06e-15 | 20 |
ecto-epithelial cell | 1.93e-09 | 34 |
endo-epithelial cell | 7.23e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 4.06e-99 | 3 |
jaw skeleton | 1.16e-73 | 4 |
splanchnocranium | 1.16e-73 | 4 |
primary subdivision of cranial skeletal system | 3.67e-59 | 5 |
protuberance | 1.73e-49 | 6 |
pharyngeal arch | 1.73e-49 | 6 |
embryonic head | 1.73e-49 | 6 |
epithelium of mucosa | 7.14e-38 | 8 |
gingiva | 7.14e-38 | 8 |
cranial skeletal system | 1.84e-27 | 11 |
mouth mucosa | 1.11e-23 | 13 |
axial skeletal system | 8.88e-22 | 14 |
head | 1.37e-21 | 56 |
anterior region of body | 1.49e-19 | 62 |
craniocervical region | 1.49e-19 | 62 |
subdivision of skeletal system | 3.61e-19 | 16 |
pharyngeal arch system | 3.90e-17 | 18 |
mucosa | 1.06e-15 | 20 |
oral opening | 2.38e-14 | 22 |
surface structure | 2.00e-12 | 99 |
respiratory system epithelium | 1.92e-11 | 28 |
mouth | 4.48e-11 | 29 |
stomodeum | 4.48e-11 | 29 |
orifice | 4.60e-09 | 36 |
subdivision of head | 7.75e-07 | 49 |