FFCP PHASE1:Hg19::chr4:177608590..177608593,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:177608590..177608593,- to FFCP PHASE1:Hg19::chr4:177608590..177608593,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:177608590..177608593,- | |||
|description=CAGE_peak_at_chr4:177608590..177608593,- | |||
|id=chr4:177608590..177608593,- | |||
|ontology_enrichment_celltype=CL:0000055!8.83e-20!180;CL:0000057!4.54e-18!75;CL:0002620!7.74e-11!23;CL:0002334!1.09e-09!12;CL:0000144!3.06e-08!625;CL:0002371!9.75e-08!591;CL:0002321!5.40e-07!248;CL:0000220!5.75e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.06e-12;12!CL:0002595;1.32e-11;5!CL:0002593;3.84e-08;2!CL:0002583;1.24e-07;2!CL:0000359;2.93e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,1.54e-12,12;CL:0002595,2.54e-11,5;CL:0000057,2.17e-08,76;CL:0002593,7.78e-08,2;CL:0002583,2.37e-07,2;CL:0000359,4.54e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.49e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.71e-27;14!DOID:120;4.24e-13;27!DOID:193;4.93e-12;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.05e-28,14;DOID:120,2.11e-13,27;DOID:193,2.58e-12,29 | |||
|ontology_enrichment_uberon=UBERON:0003102!1.85e-12!95;UBERON:0002199!1.16e-09!45;UBERON:0002416!1.16e-09!45;UBERON:0000914!5.00e-09!83;UBERON:0002329!5.00e-09!83;UBERON:0003077!5.00e-09!83;UBERON:0003059!5.00e-09!83;UBERON:0007282!5.00e-09!83;UBERON:0009618!5.00e-09!83;UBERON:0007285!5.00e-09!83;UBERON:0002097!4.44e-08!40;UBERON:0000486!5.15e-08!82;UBERON:0005256!6.38e-07!143;UBERON:0004290!9.93e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0000992;1.20e-11;13!UBERON:0003834;1.32e-11;5!UBERON:0001533;1.32e-11;5!UBERON:0002118;6.90e-11;5!UBERON:0004573;3.08e-09;33!UBERON:0004571;3.08e-09;33!UBERON:0000991;7.18e-09;21!UBERON:0003513;2.73e-08;7!UBERON:0002456;3.84e-08;2!UBERON:0002119;4.53e-08;4!UBERON:0005406;4.82e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000992,3.97e-12,13;UBERON:0003834,2.54e-11,5;UBERON:0001533,2.54e-11,5;UBERON:0002118,2.83e-11,5;UBERON:0004573,3.19e-10,33;UBERON:0004571,3.19e-10,33;UBERON:0000991,2.88e-09,21;UBERON:0009196,2.88e-09,21;UBERON:0009117,2.88e-09,21;UBERON:0005564,2.88e-09,21;UBERON:0004176,8.77e-09,22;UBERON:0002119,2.11e-08,4;UBERON:0003513,4.31e-08,7;UBERON:0005406,4.31e-08,2;UBERON:0002456,7.78e-08,2;UBERON:0003134,1.30e-07,37;UBERON:0000474,1.30e-07,37;UBERON:0001637,1.48e-07,42;UBERON:0003509,1.48e-07,42;UBERON:0004572,1.48e-07,42 | |||
|phase1_expression=0.726713517082227,2.78330681058278,0.281908808191942,1.0007329835313,0.893922188854576,2.61701557230111,0,0.631719873426831,0.261185628199839,0.737201809504527,0,0,0.263766978228454,0.74259811776028,0.994192127183747,1.34465029290355,0.602694528023977,1.46062018077475,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0.361439152384566,0,0.434539556882471,0,2.91980922181582,0.0945348171640679,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0.735326160691737,1.62028389576352,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0.993943903390637,0.25326102332916,0.397227542439656,1.14734648299525,0.354668382198357,0.560677600142307,0,0.49333509683432,0,0.269421344139376,0,0,0,0,1.24864030732128,0,0.448346041655403,0.352303495931295,0.485618833104395,0.421352420106746,0.204154171254893,0.122834317311768,0.103325781175765,0,1.48360157567134,0,0,0,0.625592599359821,0,0,0.30648779579902,0.300476117813194,0,1.61450672119976,0.85422955527427,1.05965950579781,1.80054657650641,0.515262646192195,0.257640540045629,0.558350568994769,0.506328996723799,0.974370051611986,0.504867548488229,0.368199594569197,0.161646056818812,1.06502877754984,0.705264687593482,0.67824236924195,0,1.09098448236334,0.286804595389004,0.121973706129595,0,0,0.10366105501537,0,0,0,1.28648187638577,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0.603173834469785,0.555530670951178,0,1.03993478527958,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0.93733833986777,0.671928512795438,0.567100388969546,0.179117045405697,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0.26593811658487,0,0,0,0.532844358032199,0,0,0,0.325736184293735,0.355391948742546,0,0,1.74306691720059,0.299918973546171,0,0,0,0.239624855491583,0,0,1.59259437334337,2.05476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0.542530047399471,0,2.3195768543631,0.157702415033935,0.35142424497814,0,0,0,1.32845119707087,0.184369168541703,0.868836144680828,0.195801157462741,0,0,0,0,0,3.32870879020994,0,1.48864684691266,0.306923946576125,0.841980283299221,0.384417447767103,1.02341449813341,0.804269605718038,1.48418066444991,1.23367755042124,1.24293207719189,0.0821271560138091,1.55776328755086,1.39452454151951,0,2.00506470303285,0.552485933615378,0,0.728364672026868,0.655622074797121,0,0.0770153371044148,0,0,0,0,0,0.863663664408557,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.165018999841176,0,0.650060246036521,1.6068392984416,0.096670718292122,0.154048617114644,0,0.827019434907183,0.214840489736547,0,0.170453254832202,0.178064071293475,1.4875642382488,0.192190067365106,0.638063562472921,0.10115778085555,4.18360994367557,0.94443704049192,0,1.23213432070436,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0.54907405947211,0.117812402345686,0,1.58510321173008,0,0.48763373908959,3.1682753652067,1.05650146756755,0.136499911407986,0.282810863907425,0,0,2.65375590096488,1.31535265576129,0,0,0,0.6196469961995,0.563391205064483,0,0,0.35667105148125,0.354761064070598,0.844430541190656,0,0,0,0.192444225451024,0,0,0,0.86101074534246,0,0.886860307073351,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0,0,0,0,0,0.311039587661807,0.0898683511473268,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.0967563312890851,0,0,0.0969890164884194,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0,0.271808412147228,0.104602846312333,0.101998217636322,0.288950589901519,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0.105600336519406,0.537862017998534,0,0,0,0,2.71499800876856,0.864221491201268,5.87857248196936,0,0,1.19271615249795,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0.414239055347196,0.496166021811951,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0.701139929541673,0.554805861502613,0.947015026375446,0.754703705257725,0,0.686520205190771,0.453692771289717,0.310874401165561,0.443565449968902,1.27437413730962,1.79921244865442,0.310525913752519,1.65882483136342,2.92425886013794,2.08698024724694,1.20206087197775,3.42724690951916,1.62748293281865,0.727394636810238,1.50374779859484,1.85613503951397,1.19428766609585,1.60011105865261,0.343395705182793,0.336749488765919,0,0.192619830407303,0,0,0.226705925512272,0.231522474323834,0.244736704506468,0.358177682162975,0,0.219284049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| ||
|short_description=p@chr4:177608590..177608593,- | |||
}} | }} |
Latest revision as of 03:39, 30 July 2015
Short description: | p@chr4:177608590..177608593, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:177608590..177608593, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 1.54e-12 | 12 |
smooth muscle cell of the subclavian artery | 2.54e-11 | 5 |
fibroblast | 2.17e-08 | 76 |
smooth muscle cell of the internal thoracic artery | 7.78e-08 | 2 |
subcutaneous preadipocyte | 2.37e-07 | 2 |
vascular associated smooth muscle cell | 4.54e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
female gonad | 3.97e-12 | 13 |
thoracic segment blood vessel | 2.54e-11 | 5 |
subclavian artery | 2.54e-11 | 5 |
right ovary | 2.83e-11 | 5 |
systemic artery | 3.19e-10 | 33 |
systemic arterial system | 3.19e-10 | 33 |
gonad | 2.88e-09 | 21 |
indifferent external genitalia | 2.88e-09 | 21 |
indifferent gonad | 2.88e-09 | 21 |
gonad primordium | 2.88e-09 | 21 |
external genitalia | 8.77e-09 | 22 |
left ovary | 2.11e-08 | 4 |
trunk blood vessel | 4.31e-08 | 7 |
perirenal fat | 4.31e-08 | 2 |
internal thoracic artery | 7.78e-08 | 2 |
female reproductive organ | 1.30e-07 | 37 |
female reproductive system | 1.30e-07 | 37 |
artery | 1.48e-07 | 42 |
arterial blood vessel | 1.48e-07 | 42 |
arterial system | 1.48e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.05e-28 | 14 |
female reproductive organ cancer | 2.11e-13 | 27 |
reproductive organ cancer | 2.58e-12 | 29 |