FFCP PHASE1:Hg19::chr5:134906654..134906662,-: Difference between revisions
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|id=chr5:134906654..134906662,-
|short_description=p@chr5:134906654..134906662,-
|description=CAGE_peak_at_chr5:134906654..134906662,-
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:134906654..134906662,- | |||
|coexpression_cluster_id=C607 | |||
|description=CAGE_peak_at_chr5:134906654..134906662,- | |||
|id=chr5:134906654..134906662,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000312;6.78e-08;5!CL:0000240;8.72e-07;6!CL:0000311;8.72e-07;6!CL:0000079;8.72e-07;6!CL:0000237;8.72e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000312,7.01e-08,5;CL:0000240,8.97e-07,6;CL:0000311,8.97e-07,6;CL:0000079,8.97e-07,6;CL:0000237,8.97e-07,6;CL:0000036,8.97e-07,6;CL:0000357,8.97e-07,6;CL:0000114,8.97e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000357;8.72e-07;6!CL:0000114;8.72e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;1.12e-09;4!DOID:4362;5.73e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.12e-09,4;DOID:4362,5.73e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.47e-23!115;UBERON:0002616!4.19e-18!59;UBERON:0001049!6.34e-17!57;UBERON:0005068!6.34e-17!57;UBERON:0006241!6.34e-17!57;UBERON:0007135!6.34e-17!57;UBERON:0001869!5.00e-15!32;UBERON:0003080!6.35e-15!42;UBERON:0000955!1.59e-14!69;UBERON:0006238!1.59e-14!69;UBERON:0002020!3.85e-14!34;UBERON:0003528!3.85e-14!34;UBERON:0001893!5.36e-14!34;UBERON:0003056!8.44e-14!61;UBERON:0003075!1.14e-13!86;UBERON:0007284!1.14e-13!86;UBERON:0000033!2.71e-13!123;UBERON:0002780!3.66e-13!41;UBERON:0001890!3.66e-13!41;UBERON:0006240!3.66e-13!41;UBERON:0002346!7.84e-13!90;UBERON:0000153!2.20e-12!129;UBERON:0007811!2.20e-12!129;UBERON:0002791!2.85e-12!33;UBERON:0000956!9.20e-12!25;UBERON:0000203!9.20e-12!25;UBERON:0001017!1.59e-11!82;UBERON:0002619!4.46e-11!22;UBERON:0005743!8.73e-11!86;UBERON:0000200!1.75e-09!6;UBERON:0000073!2.38e-09!94;UBERON:0001016!2.38e-09!94;UBERON:0004121!7.25e-09!169;UBERON:0000924!1.61e-08!173;UBERON:0006601!1.61e-08!173;UBERON:0001954!2.30e-08!2;UBERON:0003022!2.30e-08!2;UBERON:0002421!2.30e-08!2;UBERON:0002600!2.30e-08!2;UBERON:0000064!2.81e-08!219;UBERON:0001950!1.97e-07!20;UBERON:0000349!4.24e-07!5;UBERON:0002298!4.28e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002148;9.86e-18;2!UBERON:0006331;9.86e-18;2!UBERON:0009662;9.86e-18;2!UBERON:0000988;2.74e-12;3!UBERON:0001872;6.78e-08;5!UBERON:0000002;7.58e-07;6!UBERON:0001560;7.58e-07;6!UBERON:0002298;8.72e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002148,1.27e-17,2;UBERON:0006331,1.27e-17,2;UBERON:0009662,1.27e-17,2;UBERON:0000988,3.24e-12,3;UBERON:0001872,6.13e-08,5;UBERON:0000002,7.58e-07,6;UBERON:0001560,7.58e-07,6;UBERON:0002298,9.49e-07,6 | |||
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| ||
|short_description=p@chr5:134906654..134906662,- | |||
}} | }} |
Latest revision as of 09:58, 30 July 2015
Short description: | p@chr5:134906654..134906662, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:134906654..134906662, - |
Coexpression cluster: | C607_small_cervical_Keratinocyte_Sebocyte_maxillary_normal_skin |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratinocyte | 7.01e-08 | 5 |
stratified squamous epithelial cell | 8.97e-07 | 6 |
keratin accumulating cell | 8.97e-07 | 6 |
stratified epithelial cell | 8.97e-07 | 6 |
keratinizing barrier epithelial cell | 8.97e-07 | 6 |
epithelial fate stem cell | 8.97e-07 | 6 |
stratified epithelial stem cell | 8.97e-07 | 6 |
surface ectodermal cell | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
locus ceruleus | 1.27e-17 | 2 |
brainstem nucleus | 1.27e-17 | 2 |
hindbrain nucleus | 1.27e-17 | 2 |
pons | 3.24e-12 | 3 |
parietal lobe | 6.13e-08 | 5 |
uterine cervix | 7.58e-07 | 6 |
neck of organ | 7.58e-07 | 6 |
brainstem | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.12e-09 | 4 |
cervical cancer | 5.73e-08 | 5 |