FFCP PHASE1:Hg19::chr5:136678555..136678569,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:136678555..136678569,-
|short_description=p@chr5:136678555..136678569,-
|description=CAGE_peak_at_chr5:136678555..136678569,-
|association_with_transcript=...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:136678555..136678569,- | |||
|description=CAGE_peak_at_chr5:136678555..136678569,- | |||
|id=chr5:136678555..136678569,- | |||
|ontology_enrichment_celltype=CL:0000071!2.10e-35!18;CL:0002546!2.10e-35!18;CL:0002139!2.89e-29!24;CL:0000076!6.94e-28!62;CL:1000413!1.31e-26!9;CL:0000066!1.01e-22!254;CL:0000115!1.02e-18!35;CL:0002544!1.58e-18!6;CL:0002543!2.64e-18!6;CL:0000213!3.25e-16!57;CL:0000215!3.25e-16!57;CL:0002078!4.91e-14!44;CL:0000220!1.42e-10!246;CL:0002321!2.08e-10!248;CL:0002618!2.72e-09!3;CL:0002545!4.59e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000071;1.80e-48;18!CL:1000413;3.18e-43;9!CL:0002139;3.99e-36;24!CL:0002544;1.50e-29;6!CL:0000115;7.44e-23;36!CL:0002543;1.25e-17;6!CL:0002078;1.43e-14;45!CL:1001319;1.86e-12;1!CL:1000600;1.86e-12;1!CL:0000213;7.12e-11;58!CL:0000215;7.12e-11;58!CL:0000076;3.06e-09;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000071,1.36e-48,18;CL:0002546,1.36e-48,18;CL:1000413,2.12e-43,9;CL:0002139,3.24e-36,24;CL:0002544,1.44e-29,6;CL:0000115,8.12e-24,36;CL:0002078,7.59e-19,45;CL:0000213,9.71e-18,58;CL:0000215,9.71e-18,58;CL:0002543,1.29e-17,6;CL:0000076,3.14e-16,63;CL:1001319,1.75e-12,1;CL:1000600,1.75e-12,1;CL:0000066,5.57e-12,253;CL:0000222,8.28e-08,121;CL:0002545,9.54e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002546;1.80e-48;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;7.03e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,7.03e-13,1 | |||
|ontology_enrichment_uberon=UBERON:0001986!2.10e-35!18;UBERON:0004638!2.10e-35!18;UBERON:0004852!2.10e-35!18;UBERON:0000487!3.06e-32!22;UBERON:0006914!7.56e-28!25;UBERON:0003915!1.31e-26!9;UBERON:0004700!1.31e-26!9;UBERON:0001917!1.31e-26!9;UBERON:0001638!6.04e-12!9;UBERON:0003920!6.04e-12!9;UBERON:0004582!6.04e-12!9;UBERON:0002049!2.06e-11!79;UBERON:0007798!2.06e-11!79;UBERON:0001981!1.78e-10!60;UBERON:0007500!1.78e-10!60;UBERON:0004537!1.78e-10!60;UBERON:0006965!1.78e-10!60;UBERON:0000055!8.22e-10!69;UBERON:0005800!4.59e-07!2;UBERON:0001515!4.59e-07!2;UBERON:0000488!6.87e-07!4;UBERON:0004535!8.70e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.80e-48;18!UBERON:0001986;1.80e-48;18!UBERON:0004852;1.80e-48;18!UBERON:0003915;3.18e-43;9!UBERON:0004700;3.18e-43;9!UBERON:0001917;3.18e-43;9!UBERON:0000487;1.71e-39;22!UBERON:0006914;1.21e-34;25!UBERON:0000490;4.59e-32;33!UBERON:0004645;1.86e-12;1!UBERON:0001256;1.86e-12;1!UBERON:0001259;1.86e-12;1!UBERON:0001638;5.95e-12;9!UBERON:0003920;5.95e-12;9!UBERON:0004582;5.95e-12;9!UBERON:0001637;6.49e-09;42!UBERON:0003509;6.49e-09;42!UBERON:0004572;6.49e-09;42!UBERON:0000947;1.22e-08;21!UBERON:0010191;1.22e-08;21!UBERON:0007500;1.56e-08;56!UBERON:0001981;1.56e-08;56!UBERON:0004537;1.56e-08;56!UBERON:0003914;2.11e-07;74!UBERON:0000055;3.44e-07;65!UBERON:0001255;7.40e-07;2!UBERON:0001556;7.40e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.36e-48,18;UBERON:0001986,1.36e-48,18;UBERON:0004852,1.36e-48,18;UBERON:0003915,2.12e-43,9;UBERON:0004700,2.12e-43,9;UBERON:0001917,2.12e-43,9;UBERON:0000487,1.36e-39,22;UBERON:0006914,9.93e-35,25;UBERON:0007500,4.05e-14,59;UBERON:0001981,4.05e-14,59;UBERON:0004537,4.05e-14,59;UBERON:0006965,4.05e-14,59;UBERON:0004645,1.75e-12,1;UBERON:0001256,1.75e-12,1;UBERON:0001259,1.75e-12,1;UBERON:0000055,4.20e-12,68;UBERON:0001638,6.06e-12,9;UBERON:0003920,6.06e-12,9;UBERON:0004582,6.06e-12,9;UBERON:0002049,2.08e-10,78;UBERON:0007798,2.08e-10,78;UBERON:0004872,1.03e-09,83;UBERON:0001637,4.61e-09,42;UBERON:0003509,4.61e-09,42;UBERON:0004572,4.61e-09,42;UBERON:0000947,1.21e-08,21;UBERON:0010191,1.21e-08,21;UBERON:0000490,1.52e-07,148;UBERON:0004535,4.04e-07,109;UBERON:0001009,6.73e-07,112;UBERON:0001255,7.20e-07,2;UBERON:0001556,7.20e-07,2;UBERON:0005800,9.54e-07,2;UBERON:0001515,9.54e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0,0.263504357079378,0,0,0,0,0,0,0,0,0,1.19257444420023,2.58070378531837,4.51282652089873,0.56530794192401,1.67799774483962,1.92582629358047,0.208994966536811,0.775250277507987,0,0,0,0,0,0.367663080345869,1.62028389576352,0.714397826272638,0.44905874525234,0.112611480483322,3.06633274931766,6.6448596169769,8.24407847686833,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0,0.0925884451585296,0,0,1.44331342025273,0.231860809950154,0,0,0,0,0,0,0,0,0,0,1.00789276919316,0.425325291727159,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0.576570202095319,7.2739246121913,0,0,0,0,0,0,0,0,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01090682660736,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,0.568272293612826,0,0,0,0,0,0.222617410045812,0,0.211125408127993,0,0,0,0,0,0.311039587661807,0.808815160325942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0.959293472527256,0,0,0,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,2.00640639386872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0.941063278792687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453411851024545,0,0,1.25362188757041,0.308801447160972,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687034029507179,0,0,0,0.381382095467167,0,0,0,0,0,0,15.7221040809693,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0.857440047187092,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.426067023795788,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17021971490014,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0.705789743431384,0.481448200135009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52350132694021,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0,0.263504357079378,0,0,0,0,0,0,0,0,0,1.19257444420023,2.58070378531837,4.51282652089873,0.56530794192401,1.67799774483962,1.92582629358047,0.208994966536811,0.775250277507987,0,0,0,0,0,0.367663080345869,1.62028389576352,0.714397826272638,0.44905874525234,0.112611480483322,3.06633274931766,6.6448596169769,8.24407847686833,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0,0.0925884451585296,0,0,1.44331342025273,0.231860809950154,0,0,0,0,0,0,0,0,0,0,1.00789276919316,0.425325291727159,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0.576570202095319,7.2739246121913,0,0,0,0,0,0,0,0,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01090682660736,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,0.568272293612826,0,0,0,0,0,0.222617410045812,0,0.211125408127993,0,0,0,0,0,0.311039587661807,0.808815160325942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0.959293472527256,0,0,0,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,2.00640639386872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0.941063278792687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453411851024545,0,0,1.25362188757041,0.308801447160972,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687034029507179,0,0,0,0.381382095467167,0,0,0,0,0,0,15.7221040809693,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0.857440047187092,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.426067023795788,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17021971490014,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0.705789743431384,0.481448200135009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52350132694021,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:136678555..136678569,- | |||
}} | }} |
Latest revision as of 10:07, 30 July 2015
Short description: | p@chr5:136678555..136678569, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:136678555..136678569, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood vessel endothelial cell | 1.36e-48 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.36e-48 | 18 |
endothelial cell of artery | 2.12e-43 | 9 |
endothelial cell of vascular tree | 3.24e-36 | 24 |
aortic endothelial cell | 1.44e-29 | 6 |
endothelial cell | 8.12e-24 | 36 |
meso-epithelial cell | 7.59e-19 | 45 |
lining cell | 9.71e-18 | 58 |
barrier cell | 9.71e-18 | 58 |
vein endothelial cell | 1.29e-17 | 6 |
squamous epithelial cell | 3.14e-16 | 63 |
bladder cell | 1.75e-12 | 1 |
lower urinary tract cell | 1.75e-12 | 1 |
epithelial cell | 5.57e-12 | 253 |
mesodermal cell | 8.28e-08 | 121 |
thoracic aorta endothelial cell | 9.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.36e-48 | 18 |
endothelium | 1.36e-48 | 18 |
cardiovascular system endothelium | 1.36e-48 | 18 |
endothelial tube | 2.12e-43 | 9 |
arterial system endothelium | 2.12e-43 | 9 |
endothelium of artery | 2.12e-43 | 9 |
simple squamous epithelium | 1.36e-39 | 22 |
squamous epithelium | 9.93e-35 | 25 |
epithelial tube open at both ends | 4.05e-14 | 59 |
blood vessel | 4.05e-14 | 59 |
blood vasculature | 4.05e-14 | 59 |
vascular cord | 4.05e-14 | 59 |
urinary bladder urothelium | 1.75e-12 | 1 |
wall of urinary bladder | 1.75e-12 | 1 |
mucosa of urinary bladder | 1.75e-12 | 1 |
vessel | 4.20e-12 | 68 |
vein | 6.06e-12 | 9 |
venous blood vessel | 6.06e-12 | 9 |
venous system | 6.06e-12 | 9 |
vasculature | 2.08e-10 | 78 |
vascular system | 2.08e-10 | 78 |
splanchnic layer of lateral plate mesoderm | 1.03e-09 | 83 |
artery | 4.61e-09 | 42 |
arterial blood vessel | 4.61e-09 | 42 |
arterial system | 4.61e-09 | 42 |
aorta | 1.21e-08 | 21 |
aortic system | 1.21e-08 | 21 |
unilaminar epithelium | 1.52e-07 | 148 |
cardiovascular system | 4.04e-07 | 109 |
circulatory system | 6.73e-07 | 112 |
urinary bladder | 7.20e-07 | 2 |
lower urinary tract | 7.20e-07 | 2 |
segment of aorta | 9.54e-07 | 2 |
thoracic aorta | 9.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 7.03e-13 | 1 |