FFCP PHASE1:Hg19::chr5:139608097..139608109,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr5:139608097..139608109,+ | |||
|coexpression_cluster_id=C1953 | |||
|description=CAGE_peak_at_chr5:139608097..139608109,+ | |||
|id=chr5:139608097..139608109,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006242;1.78e-29;1!UBERON:0001045;3.16e-29;1 | |||
|ontology_enrichment_disease=DOID:114!4.90e-20!2;DOID:178!9.05e-11!1;DOID:326!9.05e-11!1;DOID:3978!9.05e-11!1;DOID:3394!9.05e-11!1;DOID:5844!9.05e-11!1;DOID:1287!1.69e-10!4 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.15e-15;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.15e-15,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.47e-12!115;UBERON:0001154!4.15e-11!1;UBERON:0001153!4.15e-11!1;UBERON:0002171!5.57e-11!1;UBERON:0006518!5.57e-11!1;UBERON:0008949!5.57e-11!1;UBERON:0000101!5.57e-11!1;UBERON:0002167!5.57e-11!1;UBERON:0002135!6.14e-11!1;UBERON:0005409!2.53e-09!35;UBERON:0000160!1.46e-08!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;7.15e-31;22!UBERON:0001154;3.16e-29;1!UBERON:0001153;3.16e-29;1!UBERON:0009854;3.16e-29;1!UBERON:0000160;1.91e-25;17!UBERON:0002108;1.52e-23;4!UBERON:0004921;2.10e-18;33!UBERON:0001155;1.80e-13;9!UBERON:0000059;3.30e-11;11!UBERON:0001555;5.05e-11;54!UBERON:0002110;8.99e-11;3!UBERON:0002114;1.09e-10;2!UBERON:0009856;2.43e-08;4!UBERON:0000945;5.23e-07;5!UBERON:0010039;5.23e-07;5!UBERON:0004907;6.39e-07;5!UBERON:0001007;9.93e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,3.16e-29,1;UBERON:0001153,3.16e-29,1;UBERON:0001045,3.16e-29,1;UBERON:0005409,2.25e-27,25;UBERON:0000160,1.97e-25,17;UBERON:0002108,1.81e-23,4;UBERON:0001155,1.69e-13,9;UBERON:0000059,3.14e-11,11;UBERON:0002110,8.99e-11,3;UBERON:0006242,8.99e-11,3;UBERON:0002114,1.20e-10,2;UBERON:0001007,3.58e-07,145;UBERON:0001555,3.58e-07,145;UBERON:0007026,3.58e-07,145;UBERON:0004907,6.39e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,1.38141957765574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,1.85760885457012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41524791582964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.14384437367021,0,0,0,0,0,0,0,0,0,0,5.7108876999879,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,5.84269110597214,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr5:139608097..139608109,+ | |||
}} |
Latest revision as of 10:28, 30 July 2015
Short description: | p@chr5:139608097..139608109, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:139608097..139608109, + |
Coexpression cluster: | C1953_stomach_signet_gall_small_giant_adenocarcinoma_Eosinophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 3.16e-29 | 1 |
caecum | 3.16e-29 | 1 |
midgut | 3.16e-29 | 1 |
gastrointestinal system | 2.25e-27 | 25 |
intestine | 1.97e-25 | 17 |
small intestine | 1.81e-23 | 4 |
colon | 1.69e-13 | 9 |
large intestine | 3.14e-11 | 11 |
gallbladder | 8.99e-11 | 3 |
gall bladder primordium | 8.99e-11 | 3 |
duodenum | 1.20e-10 | 2 |
digestive system | 3.58e-07 | 145 |
digestive tract | 3.58e-07 | 145 |
primitive gut | 3.58e-07 | 145 |
lower digestive tract | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.15e-15 | 2 |