FFCP PHASE1:Hg19::chr5:150020245..150020268,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=11346 | |EntrezGene=entrezgene:11346 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=30672 | |HGNC=HGNC:30672 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_ENST00000519664_5end | |association_with_transcript=5bp_to_ENST00000519664_5end | ||
|cluster_id=chr5:150020245..150020268,+ | |||
|description=CAGE_peak_3_at_SYNPO_5end | |description=CAGE_peak_3_at_SYNPO_5end | ||
|id=chr5:150020245..150020268,+ | |id=chr5:150020245..150020268,+ | ||
Revision as of 11:40, 30 July 2015
| Short description: | p3@SYNPO |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_SYNPO_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 5bp_to_ENST00000519664_5end |
| EntrezGene: | 11346 |
| HGNC: | 30672 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p3@SYNPO |
|---|
0
5
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35
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mesodermal cell | 8.33e-16 | 121 |
| vascular associated smooth muscle cell | 1.48e-13 | 32 |
| endothelial cell of vascular tree | 1.43e-11 | 24 |
| smooth muscle cell | 2.04e-11 | 43 |
| smooth muscle myoblast | 2.04e-11 | 43 |
| lining cell | 1.57e-10 | 58 |
| barrier cell | 1.57e-10 | 58 |
| embryonic cell | 3.80e-10 | 250 |
| blood vessel endothelial cell | 2.04e-09 | 18 |
| embryonic blood vessel endothelial progenitor cell | 2.04e-09 | 18 |
Showing 1 to 10 of 16 entries
| Ontology term | p-value | n |
|---|---|---|
| vasculature | 1.93e-29 | 78 |
| vascular system | 1.93e-29 | 78 |
| vessel | 4.01e-27 | 68 |
| splanchnic layer of lateral plate mesoderm | 9.36e-25 | 83 |
| epithelial tube open at both ends | 1.75e-24 | 59 |
| blood vessel | 1.75e-24 | 59 |
| blood vasculature | 1.75e-24 | 59 |
| vascular cord | 1.75e-24 | 59 |
| circulatory system | 9.36e-24 | 112 |
| epithelial tube | 8.33e-23 | 117 |
Showing 1 to 10 of 46 entries
