FFCP PHASE1:Hg19::chr5:2756600..2756630,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:2756600..2756630,+ | |||
|description=CAGE_peak_at_chr5:2756600..2756630,+ | |||
|id=chr5:2756600..2756630,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.70e-12!254;CL:0002620!1.81e-11!23;CL:0002076!1.36e-08!43;CL:0002551!9.03e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000349;6.59e-23;19!CL:0002577;7.16e-15;3!CL:0002536;2.60e-10;2!CL:0002537;7.16e-09;5!CL:0002541;1.60e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,4.76e-23,19;CL:0002577,7.53e-15,3;CL:0002536,2.12e-10,2;CL:0000066,2.35e-09,253;CL:0002537,5.41e-09,5;CL:0002541,1.60e-07,3;CL:0002076,6.10e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4556;7.26e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:4556,7.83e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.07e-13!14;UBERON:0000158!1.07e-13!14;UBERON:0003124!4.29e-10!7;UBERON:0002097!4.12e-09!40;UBERON:0002199!4.28e-09!45;UBERON:0002416!4.28e-09!45;UBERON:0000915!8.73e-09!52;UBERON:0004923!9.13e-09!57;UBERON:0005178!1.03e-08!34;UBERON:0002224!1.03e-08!34;UBERON:0005181!2.60e-08!35;UBERON:0003102!4.47e-08!95;UBERON:0000064!6.36e-08!219;UBERON:0000478!1.42e-07!24;UBERON:0005157!1.96e-07!51;UBERON:0005153!2.74e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.13e-22;10!UBERON:0000158;3.13e-22;10!UBERON:0000478;1.02e-17;24!UBERON:0000305;2.16e-16;7!UBERON:0001987;2.86e-11;4!UBERON:0003124;1.60e-07;3!UBERON:0000920;1.60e-07;3!UBERON:0002048;8.25e-07;22!UBERON:0000117;8.25e-07;22!UBERON:0000171;8.25e-07;22!UBERON:0000170;8.25e-07;22!UBERON:0000065;8.57e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.39e-32,14;UBERON:0000158,5.39e-32,14;UBERON:0000478,7.90e-18,24;UBERON:0003124,4.72e-17,7;UBERON:0000305,1.34e-16,7;UBERON:0004871,1.72e-14,8;UBERON:0001987,2.97e-11,4;UBERON:0004340,2.97e-11,4;UBERON:0004923,1.14e-10,66;UBERON:0000065,7.20e-08,54;UBERON:0000920,1.60e-07,3;UBERON:0002048,8.59e-07,22;UBERON:0000117,8.59e-07,22;UBERON:0000171,8.59e-07,22;UBERON:0000170,8.59e-07,22;UBERON:0005597,8.59e-07,22;UBERON:0000118,8.59e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,2.62129646556207,3.69273769519835,0.123766352960047,0,0,0,0,0,0.861847406537515,1.02000345622126,0.940364164434263,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0,0.312160076830321,0.570471821544449,0.747243402759005,0.352303495931295,0.161872944368132,0.702254033511242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0.213557388818567,0.635795703478686,0,0.309157587715317,0,0.37223371266318,0.168776332241266,0.487185025805993,0.252433774244115,0.276149695926898,0.484938170456436,0,0.302256294682921,0.169560592310488,0.193260853163297,0,0.286804595389004,0.487894824518382,0.927708378250397,0.232387885739037,0.932949495138334,0.756962552626885,0.72995471815166,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35287282397425,0,0.329250856225877,0,0.201057944823262,0.740707561268237,0.325808305310325,1.03993478527958,0,0,0,0,0,0,0.790204397959275,6.00940313466411,0,0,0,0.93733833986777,0.335964256397719,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,1.41849132023278,0.266422179016099,0,0,0,1.30294473717494,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0.195801157462741,0,0,0,0,3.63753085735511,4.99306318531491,3.32629322662648,0.496215615637554,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.246381468041427,0.519254429183621,0,1.20859449591622,0.200506470303285,0.276242966807689,0,0,0,0,0,0.784349769176855,0,0.211103257785751,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0.412164046590889,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.826424576804891,1.53752053892085,1.91419068741876,1.51736671283325,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0,0,0.731140468893853,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0.211107635297664,0,1.51789269506286,0.349934720244983,0.0962221127255121,2.01090682660736,0,0.847294206991012,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,6.86112604746889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81991175580304,5.04839957415486,1.84296421259539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.51069402713083,0.61221999997337,0,0,0,16.0743623602197,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0.0769502585037971,0,5.07240589653732,0,1.4124158349861,9.25103363222567,0.457987967009312,9.59462596833542,0,0,0,0,0,0,0,0,0,0,1.41353071433941,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881931576729399,0.522355239482415,0.17472666824203,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,1.59847687665704,0,0,0,0,0,2.35694034616795,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33073541132698,1.34340638123612,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,2.0289608387862,1.25763444079733,1.65695622138878,0,0,0,3.19170628885091,0,0,0,0,0,0,0,0,0,0,0.248385611765534,0,0,0,0,0,1.87333962322753,0,0.149254802886874,0,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.643324774124777,2.08795433572169,0,0.694567422971502,0.734210113519403,0.179088841081487,1.54400723580486,0.657852148736121,0,0.578742114812744,0.506827321959218,0,0,1.82315973706429,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.279759015438889,1.24415452006595,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,3.58129565066048,0,0.690359926060101,0.795664888465099,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0.443511850813194,0,0,0.203909198930495,0,0,0.333694205676207,0.156986185701028,0,1.12108865325516,0,0,0,0,0,0,0,0.801711364730253,0.62164849248911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0.475680363110274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0.143339583151451,2.0510303085114,0,0,0,0,0,0,0,6.55593431782173,0,0.203977659483963,0.26721740526556,0.918948995348449,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0.224263725161227,0,0,0,0,0.0673520530145875,0.143444410785353,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,2.62129646556207,3.69273769519835,0.123766352960047,0,0,0,0,0,0.861847406537515,1.02000345622126,0.940364164434263,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0,0.312160076830321,0.570471821544449,0.747243402759005,0.352303495931295,0.161872944368132,0.702254033511242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0.213557388818567,0.635795703478686,0,0.309157587715317,0,0.37223371266318,0.168776332241266,0.487185025805993,0.252433774244115,0.276149695926898,0.484938170456436,0,0.302256294682921,0.169560592310488,0.193260853163297,0,0.286804595389004,0.487894824518382,0.927708378250397,0.232387885739037,0.932949495138334,0.756962552626885,0.72995471815166,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35287282397425,0,0.329250856225877,0,0.201057944823262,0.740707561268237,0.325808305310325,1.03993478527958,0,0,0,0,0,0,0.790204397959275,6.00940313466411,0,0,0,0.93733833986777,0.335964256397719,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,1.41849132023278,0.266422179016099,0,0,0,1.30294473717494,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0.195801157462741,0,0,0,0,3.63753085735511,4.99306318531491,3.32629322662648,0.496215615637554,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.246381468041427,0.519254429183621,0,1.20859449591622,0.200506470303285,0.276242966807689,0,0,0,0,0,0.784349769176855,0,0.211103257785751,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0.412164046590889,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.826424576804891,1.53752053892085,1.91419068741876,1.51736671283325,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0,0,0.731140468893853,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0.211107635297664,0,1.51789269506286,0.349934720244983,0.0962221127255121,2.01090682660736,0,0.847294206991012,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,6.86112604746889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81991175580304,5.04839957415486,1.84296421259539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.51069402713083,0.61221999997337,0,0,0,16.0743623602197,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0.0769502585037971,0,5.07240589653732,0,1.4124158349861,9.25103363222567,0.457987967009312,9.59462596833542,0,0,0,0,0,0,0,0,0,0,1.41353071433941,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881931576729399,0.522355239482415,0.17472666824203,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,1.59847687665704,0,0,0,0,0,2.35694034616795,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33073541132698,1.34340638123612,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,2.0289608387862,1.25763444079733,1.65695622138878,0,0,0,3.19170628885091,0,0,0,0,0,0,0,0,0,0,0.248385611765534,0,0,0,0,0,1.87333962322753,0,0.149254802886874,0,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.643324774124777,2.08795433572169,0,0.694567422971502,0.734210113519403,0.179088841081487,1.54400723580486,0.657852148736121,0,0.578742114812744,0.506827321959218,0,0,1.82315973706429,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.279759015438889,1.24415452006595,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,3.58129565066048,0,0.690359926060101,0.795664888465099,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0.443511850813194,0,0,0.203909198930495,0,0,0.333694205676207,0.156986185701028,0,1.12108865325516,0,0,0,0,0,0,0,0.801711364730253,0.62164849248911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0.475680363110274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0.143339583151451,2.0510303085114,0,0,0,0,0,0,0,6.55593431782173,0,0.203977659483963,0.26721740526556,0.918948995348449,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0.224263725161227,0,0,0,0,0.0673520530145875,0.143444410785353,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:2756600..2756630,+ | |||
}} | }} |
Latest revision as of 14:15, 30 July 2015
Short description: | p@chr5:2756600..2756630, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:2756600..2756630, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 4.76e-23 | 19 |
placental epithelial cell | 7.53e-15 | 3 |
amniotic epithelial cell | 2.12e-10 | 2 |
epithelial cell | 2.35e-09 | 253 |
amnion mesenchymal stem cell | 5.41e-09 | 5 |
chorionic membrane mesenchymal stem cell | 1.60e-07 | 3 |
endo-epithelial cell | 6.10e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.39e-32 | 14 |
membranous layer | 5.39e-32 | 14 |
extraembryonic structure | 7.90e-18 | 24 |
chorion | 4.72e-17 | 7 |
amnion | 1.34e-16 | 7 |
somatic layer of lateral plate mesoderm | 1.72e-14 | 8 |
placenta | 2.97e-11 | 4 |
allantois | 2.97e-11 | 4 |
organ component layer | 1.14e-10 | 66 |
respiratory tract | 7.20e-08 | 54 |
egg chorion | 1.60e-07 | 3 |
lung | 8.59e-07 | 22 |
respiratory tube | 8.59e-07 | 22 |
respiration organ | 8.59e-07 | 22 |
pair of lungs | 8.59e-07 | 22 |
lung primordium | 8.59e-07 | 22 |
lung bud | 8.59e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
lung large cell carcinoma | 7.83e-07 | 3 |