FFCP PHASE1:Hg19::chr6:148501038..148501057,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:148501038..148501057,- | |||
|coexpression_cluster_id=C159 | |coexpression_cluster_id=C159 | ||
|description=CAGE_peak_at_chr6:148501038..148501057,- | |description=CAGE_peak_at_chr6:148501038..148501057,- | ||
|id=chr6:148501038..148501057,- | |id=chr6:148501038..148501057,- | ||
|ontology_enrichment_celltype=CL:0000071!2.18e-20!18;CL:0002546!2.18e-20!18;CL:0000076!6.15e-17!62;CL:0002139!1.48e-16!24;CL:0002149!2.67e-13!6;CL:0002255!2.67e-13!6;CL:0000066!2.66e-12!254;CL:0000115!4.04e-10!35;CL:1000413!1.57e-08!9;CL:0002078!1.68e-08!44;CL:0002543!1.74e-08!6;CL:0000039!2.74e-08!7;CL:0000586!2.74e-08!7;CL:0002144!3.69e-07!3 | |ontology_enrichment_celltype=CL:0000071!2.18e-20!18;CL:0002546!2.18e-20!18;CL:0000076!6.15e-17!62;CL:0002139!1.48e-16!24;CL:0002149!2.67e-13!6;CL:0002255!2.67e-13!6;CL:0000066!2.66e-12!254;CL:0000115!4.04e-10!35;CL:1000413!1.57e-08!9;CL:0002078!1.68e-08!44;CL:0002543!1.74e-08!6;CL:0000039!2.74e-08!7;CL:0000586!2.74e-08!7;CL:0002144!3.69e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000039;2.72e-17;7!CL:0000586;2.72e-17;7!CL:0002149;3.78e-11;6!CL:0002255;3.78e-11;6!CL:0000313;2.74e-08;1!CL:0000076;4.67e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.46e-17,7;CL:0000586,2.46e-17,7;CL:0000066,5.78e-12,253;CL:0002149,4.35e-11,6;CL:0002255,4.35e-11,6;CL:0000076,1.75e-09,63;CL:0000313,4.07e-08,1;CL:0002076,1.81e-07,42;CL:0000223,9.31e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.88e-12;10!UBERON:0005564;6.88e-12;10 | |||
|ontology_enrichment_disease=DOID:1749!2.52e-21!14;DOID:305!1.27e-18!106;DOID:0050687!4.23e-15!143;DOID:3001!2.67e-13!6;DOID:193!1.40e-08!29;DOID:120!9.64e-08!27;DOID:14566!9.10e-07!239 | |ontology_enrichment_disease=DOID:1749!2.52e-21!14;DOID:305!1.27e-18!106;DOID:0050687!4.23e-15!143;DOID:3001!2.67e-13!6;DOID:193!1.40e-08!29;DOID:120!9.64e-08!27;DOID:14566!9.10e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:1749;7.86e-24;14!DOID:193;3.40e-11;29!DOID:3001;3.78e-11;6!DOID:1325;5.05e-10;7!DOID:3904;5.05e-10;7!DOID:305;4.17e-09;106!DOID:120;6.57e-09;27!DOID:3151;7.01e-09;1!DOID:3149;7.01e-09;1!DOID:6193;7.84e-09;1!DOID:5409;2.38e-08;4!DOID:2152;2.74e-08;1!DOID:0050687;2.72e-07;143 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,6.97e-24,14;DOID:305,3.46e-23,106;DOID:0050687,1.91e-22,143;DOID:162,9.57e-15,235;DOID:14566,2.39e-14,239;DOID:193,3.78e-11,29;DOID:3001,4.35e-11,6;DOID:1325,5.71e-10,7;DOID:3904,5.71e-10,7;DOID:3151,7.01e-09,1;DOID:3149,7.01e-09,1;DOID:120,7.18e-09,27;DOID:6193,7.56e-09,1;DOID:5409,2.47e-08,4;DOID:2152,4.07e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001986!2.18e-20!18;UBERON:0004638!2.18e-20!18;UBERON:0004852!2.18e-20!18;UBERON:0000487!1.34e-18!22;UBERON:0006914!2.68e-18!25;UBERON:0001981!1.15e-13!60;UBERON:0007500!1.15e-13!60;UBERON:0004537!1.15e-13!60;UBERON:0006965!1.15e-13!60;UBERON:0000055!3.42e-12!69;UBERON:0002049!8.65e-11!79;UBERON:0007798!8.65e-11!79;UBERON:0004872!8.82e-10!84;UBERON:0003343!8.94e-10!4;UBERON:0004785!8.94e-10!4;UBERON:0000025!1.19e-08!194;UBERON:0000995!1.31e-08!21;UBERON:0003915!1.57e-08!9;UBERON:0004700!1.57e-08!9;UBERON:0001917!1.57e-08!9;UBERON:0004111!3.21e-08!241;UBERON:0005795!4.06e-08!22;UBERON:0003975!4.06e-08!22;UBERON:0003133!6.57e-08!48;UBERON:0003729!8.68e-08!5;UBERON:0001637!8.76e-08!42;UBERON:0003509!8.76e-08!42;UBERON:0004572!8.76e-08!42;UBERON:0003914!9.64e-08!118;UBERON:0001638!1.38e-07!9;UBERON:0003920!1.38e-07!9;UBERON:0004582!1.38e-07!9;UBERON:0004535!2.61e-07!110;UBERON:0001915!3.69e-07!3;UBERON:0001982!3.69e-07!3;UBERON:0001009!6.06e-07!113;UBERON:0004175!6.96e-07!25 | |ontology_enrichment_uberon=UBERON:0001986!2.18e-20!18;UBERON:0004638!2.18e-20!18;UBERON:0004852!2.18e-20!18;UBERON:0000487!1.34e-18!22;UBERON:0006914!2.68e-18!25;UBERON:0001981!1.15e-13!60;UBERON:0007500!1.15e-13!60;UBERON:0004537!1.15e-13!60;UBERON:0006965!1.15e-13!60;UBERON:0000055!3.42e-12!69;UBERON:0002049!8.65e-11!79;UBERON:0007798!8.65e-11!79;UBERON:0004872!8.82e-10!84;UBERON:0003343!8.94e-10!4;UBERON:0004785!8.94e-10!4;UBERON:0000025!1.19e-08!194;UBERON:0000995!1.31e-08!21;UBERON:0003915!1.57e-08!9;UBERON:0004700!1.57e-08!9;UBERON:0001917!1.57e-08!9;UBERON:0004111!3.21e-08!241;UBERON:0005795!4.06e-08!22;UBERON:0003975!4.06e-08!22;UBERON:0003133!6.57e-08!48;UBERON:0003729!8.68e-08!5;UBERON:0001637!8.76e-08!42;UBERON:0003509!8.76e-08!42;UBERON:0004572!8.76e-08!42;UBERON:0003914!9.64e-08!118;UBERON:0001638!1.38e-07!9;UBERON:0003920!1.38e-07!9;UBERON:0004582!1.38e-07!9;UBERON:0004535!2.61e-07!110;UBERON:0001915!3.69e-07!3;UBERON:0001982!3.69e-07!3;UBERON:0001009!6.06e-07!113;UBERON:0004175!6.96e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0003343;1.47e-16;4!UBERON:0004785;1.47e-16;4!UBERON:0000974;3.17e-11;6!UBERON:0000473;6.64e-09;8!UBERON:0003133;1.39e-08;44!UBERON:0004911;2.74e-08;1!UBERON:0000995;7.48e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,1.64e-16,4;UBERON:0004785,1.64e-16,4;UBERON:0000473,6.22e-09,8;UBERON:0003133,1.98e-08,48;UBERON:0004911,4.07e-08,1;UBERON:0000974,6.61e-07,10 | |||
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|short_description=p@chr6:148501038..148501057,- | |short_description=p@chr6:148501038..148501057,- | ||
}} | }} |
Latest revision as of 20:41, 30 July 2015
Short description: | p@chr6:148501038..148501057, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:148501038..148501057, - |
Coexpression cluster: | C159_choriocarcinoma_pancreatic_placenta_chorionic_testicular_bronchioalveolar_seminal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.46e-17 | 7 |
germ cell | 2.46e-17 | 7 |
epithelial cell | 5.78e-12 | 253 |
epithelial cell of uterus | 4.35e-11 | 6 |
stromal cell of endometrium | 4.35e-11 | 6 |
squamous epithelial cell | 1.75e-09 | 63 |
serous secreting cell | 4.07e-08 | 1 |
endo-epithelial cell | 1.81e-07 | 42 |
endodermal cell | 9.31e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 1.64e-16 | 4 |
respiratory system mucosa | 1.64e-16 | 4 |
testis | 6.22e-09 | 8 |
reproductive organ | 1.98e-08 | 48 |
epithelium of female gonad | 4.07e-08 | 1 |
neck | 6.61e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.97e-24 | 14 |
carcinoma | 3.46e-23 | 106 |
cell type cancer | 1.91e-22 | 143 |
cancer | 9.57e-15 | 235 |
disease of cellular proliferation | 2.39e-14 | 239 |
reproductive organ cancer | 3.78e-11 | 29 |
female reproductive endometrioid cancer | 4.35e-11 | 6 |
bronchus cancer | 5.71e-10 | 7 |
bronchogenic carcinoma | 5.71e-10 | 7 |
skin squamous cell carcinoma | 7.01e-09 | 1 |
keratoacanthoma | 7.01e-09 | 1 |
female reproductive organ cancer | 7.18e-09 | 27 |
epithelioid sarcoma | 7.56e-09 | 1 |
lung small cell carcinoma | 2.47e-08 | 4 |
ovary epithelial cancer | 4.07e-08 | 1 |