FFCP PHASE1:Hg19::chr7:44029862..44029900,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-56bp_to_ENST00000420754_5end | |||
|cluster_id=chr7:44029862..44029900,- | |||
|coexpression_cluster_id=C683 | |||
|description=CAGE_peak_1_at_ENST00000420754_5end | |||
|id=chr7:44029862..44029900,- | |||
|ontology_enrichment_celltype=CL:0002368!2.30e-16!13;CL:0002076!2.76e-16!43;CL:0002202!1.92e-11!9;CL:0002632!1.92e-11!9;CL:0000223!1.17e-10!59;CL:0002328!9.53e-10!3;CL:0000575!1.56e-07!2;CL:0002251!6.57e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0000575;3.86e-17;2!CL:0002328;4.09e-11;3!CL:0002577;6.00e-11;3!CL:0000349;8.17e-10;19!CL:0002252;2.13e-09;1!CL:0002202;3.97e-08;9!CL:0002632;3.97e-08;9!CL:0002537;4.63e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,3.57e-17,2;CL:0002328,4.66e-11,3;CL:0002577,5.43e-11,3;CL:0000349,7.08e-10,19;CL:0002252,2.22e-09,1;CL:0002202,3.73e-08,9;CL:0002632,3.73e-08,9;CL:0002537,3.92e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009143;2.50e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;4.36e-09;1!DOID:3149;4.36e-09;1!DOID:5093;8.18e-09;4!DOID:1612;8.18e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,4.91e-09,1;DOID:3149,4.91e-09,1;DOID:5093,8.85e-09,4;DOID:1612,8.85e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0001004!3.82e-13!72;UBERON:0007196!2.71e-12!14;UBERON:0001558!2.71e-12!14;UBERON:0004119!2.65e-10!169;UBERON:0000925!2.65e-10!169;UBERON:0006595!2.65e-10!169;UBERON:0000065!6.20e-10!53;UBERON:0004815!9.53e-10!3;UBERON:0002031!9.53e-10!3;UBERON:0005631!2.12e-09!14;UBERON:0000158!2.12e-09!14;UBERON:0000166!2.51e-09!21;UBERON:0000974!3.27e-09!10;UBERON:0000161!5.36e-09!35;UBERON:0006562!9.35e-09!11;UBERON:0000165!4.98e-08!28;UBERON:0000930!4.98e-08!28;UBERON:0000072!9.17e-08!46;UBERON:0004175!1.21e-07!25;UBERON:0002185!2.16e-07!4;UBERON:0000341!2.86e-07!2;UBERON:0001987!3.92e-07!4;UBERON:0004340!3.92e-07!4;UBERON:0005795!4.31e-07!22;UBERON:0001042!4.70e-07!10;UBERON:0009145!4.70e-07!10;UBERON:0001444!4.72e-07!48;UBERON:0003975!5.02e-07!22;UBERON:0000305!5.49e-07!7;UBERON:0005178!8.22e-07!34;UBERON:0002224!8.22e-07!34;UBERON:0003127!8.76e-07!2;UBERON:0003126!8.90e-07!7;UBERON:0001005!8.90e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000341;1.27e-16;2!UBERON:0001723;1.09e-11;3!UBERON:0001033;1.09e-11;3!UBERON:0001043;1.21e-11;3!UBERON:0004815;4.09e-11;3!UBERON:0002031;4.09e-11;3!UBERON:0000305;2.30e-10;7!UBERON:0002372;3.18e-09;1!UBERON:0001961;3.18e-09;1!UBERON:0001744;3.18e-09;1!UBERON:0001042;3.18e-09;1!UBERON:0001735;3.18e-09;1!UBERON:0000964;5.12e-09;4!UBERON:0010409;5.12e-09;4!UBERON:0005795;7.85e-09;1!UBERON:0000020;1.62e-08;23!UBERON:0001987;1.98e-08;4!UBERON:0001032;3.76e-08;24!UBERON:0004456;3.76e-08;24!UBERON:0000478;9.87e-08;24!UBERON:0005631;2.12e-07;10!UBERON:0000158;2.12e-07;10!UBERON:0002185;5.23e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000341,1.73e-16,2;UBERON:0005631,1.85e-13,14;UBERON:0000158,1.85e-13,14;UBERON:0001723,1.15e-11,3;UBERON:0001033,1.15e-11,3;UBERON:0010056,1.15e-11,3;UBERON:0001043,1.21e-11,3;UBERON:0009143,1.21e-11,3;UBERON:0004815,4.66e-11,3;UBERON:0002031,4.66e-11,3;UBERON:0000305,1.92e-10,7;UBERON:0002372,3.05e-09,1;UBERON:0001961,3.05e-09,1;UBERON:0001744,3.05e-09,1;UBERON:0001735,3.05e-09,1;UBERON:0004871,3.36e-09,8;UBERON:0000964,4.92e-09,4;UBERON:0010409,4.92e-09,4;UBERON:0004348,4.92e-09,4;UBERON:0005427,4.92e-09,4;UBERON:0001987,1.83e-08,4;UBERON:0004340,1.83e-08,4;UBERON:0005795,1.84e-08,22;UBERON:0000020,3.67e-08,24;UBERON:0001032,3.67e-08,24;UBERON:0004456,3.67e-08,24;UBERON:0000478,8.83e-08,24;UBERON:0001042,1.02e-07,10;UBERON:0009145,1.02e-07,10;UBERON:0006562,4.69e-07,11;UBERON:0002185,5.64e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,1.52908960491121,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,2.10844143144775,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,6.55731518926576,5.56176664176644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,5.23312862571041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1240175325762,0,0.0925884451585296,0,0,0,0,0,0,0,0,3.1608175918371,3.43394464837949,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.382838137483752,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,0.670302275535787,0,0,0.43050537267123,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67121139316383,0,3.99308912729002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0.455173793141999,1.77977555204936,0,0,0,0,0,0,0,0,0,0,0,2.50962739701486,1.53900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,0,0,0,0,0,0,4.75246180793255,0,2.71176888936639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,2.0126081255956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0.470958557103084,0,0,0,0,0,0.142953088353313,0,0,0,0,0.207216164163037,0,0.691259661814092,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0,0,0.4226557275834,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,7.67642334843531,1.1903221573187,0.0645889098360061,0.124149428591716,0,0,0,6.31378568901188,4.10679961302337,3.90641907484608,0.502055437748735,0.99798106963804,0,0,0,0,0,0.122241444182866,1.62758471326295,0.665756774185513,0,0 | |||
|short_description=p1@ENST00000420754 | |||
}} |
Latest revision as of 10:09, 31 July 2015
Short description: | p1@ENST00000420754 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000420754_5end |
Coexpression cluster: | C683_esophagus_tongue_tonsil_Corneal_cervical_Esophageal_throat |
Association with transcript: | -56bp_to_ENST00000420754_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 3.57e-17 | 2 |
bronchial epithelial cell | 4.66e-11 | 3 |
placental epithelial cell | 5.43e-11 | 3 |
extraembryonic cell | 7.08e-10 | 19 |
epithelial cell of esophagus | 2.22e-09 | 1 |
epithelial cell of tracheobronchial tree | 3.73e-08 | 9 |
epithelial cell of lower respiratory tract | 3.73e-08 | 9 |
amnion mesenchymal stem cell | 3.92e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
throat | 1.73e-16 | 2 |
extraembryonic membrane | 1.85e-13 | 14 |
membranous layer | 1.85e-13 | 14 |
tongue | 1.15e-11 | 3 |
gustatory system | 1.15e-11 | 3 |
future tongue | 1.15e-11 | 3 |
esophagus | 1.21e-11 | 3 |
esophageal region | 1.21e-11 | 3 |
lower respiratory tract epithelium | 4.66e-11 | 3 |
epithelium of bronchus | 4.66e-11 | 3 |
amnion | 1.92e-10 | 7 |
tonsil | 3.05e-09 | 1 |
mucosa-associated lymphoid tissue | 3.05e-09 | 1 |
lymphoid tissue | 3.05e-09 | 1 |
tonsillar ring | 3.05e-09 | 1 |
somatic layer of lateral plate mesoderm | 3.36e-09 | 8 |
cornea | 4.92e-09 | 4 |
eye surface | 4.92e-09 | 4 |
optic eminence | 4.92e-09 | 4 |
corneal primordium | 4.92e-09 | 4 |
placenta | 1.83e-08 | 4 |
allantois | 1.83e-08 | 4 |
embryonic uterus | 1.84e-08 | 22 |
sense organ | 3.67e-08 | 24 |
sensory system | 3.67e-08 | 24 |
entire sense organ system | 3.67e-08 | 24 |
extraembryonic structure | 8.83e-08 | 24 |
chordate pharynx | 1.02e-07 | 10 |
pharyngeal region of foregut | 1.02e-07 | 10 |
pharynx | 4.69e-07 | 11 |
bronchus | 5.64e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 4.91e-09 | 1 |
keratoacanthoma | 4.91e-09 | 1 |
thoracic cancer | 8.85e-09 | 4 |
breast cancer | 8.85e-09 | 4 |