FFCP PHASE1:Hg19::chr8:144821532..144821551,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_ENST00000534398_5end | |association_with_transcript=-14bp_to_ENST00000534398_5end | ||
|cluster_id=chr8:144821532..144821551,+ | |||
|description=CAGE_peak_2_at_ENST00000534398_5end | |description=CAGE_peak_2_at_ENST00000534398_5end | ||
|id=chr8:144821532..144821551,+ | |id=chr8:144821532..144821551,+ | ||
|ontology_enrichment_celltype=CL:0002076!2.15e-25!43;CL:0000066!1.09e-22!254;CL:0000223!2.71e-18!59;CL:0002251!3.72e-12!21;CL:0002368!8.10e-11!13;CL:0002159!3.08e-08!13;CL:0002202!9.22e-07!9;CL:0002632!9.22e-07!9 | |ontology_enrichment_celltype=CL:0002076!2.15e-25!43;CL:0000066!1.09e-22!254;CL:0000223!2.71e-18!59;CL:0002251!3.72e-12!21;CL:0002368!8.10e-11!13;CL:0002159!3.08e-08!13;CL:0002202!9.22e-07!9;CL:0002632!9.22e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;8.84e-18;42!CL:0002251;3.49e-13;20!CL:0000575;4.36e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.83e-22,42;CL:0000066,8.77e-19,253;CL:0000223,1.20e-16,58;CL:0002251,3.32e-13,20;CL:0000575,3.14e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000223;1.75e-10;58 | |||
|ontology_enrichment_disease=DOID:305!1.10e-22!106;DOID:0050687!4.74e-16!143;DOID:1749!6.04e-16!14;DOID:299!2.27e-11!25 | |ontology_enrichment_disease=DOID:305!1.10e-22!106;DOID:0050687!4.74e-16!143;DOID:1749!6.04e-16!14;DOID:299!2.27e-11!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;8.35e-16;14!DOID:299;1.28e-14;25!DOID:3119;3.77e-07;14!DOID:3493;4.36e-07;2!DOID:305;7.06e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.20e-23,106;DOID:0050687,1.01e-18,143;DOID:1749,6.28e-16,14;DOID:299,1.68e-14,25;DOID:162,3.27e-09,235;DOID:14566,7.89e-09,239;DOID:3119,3.95e-07,14;DOID:3493,5.09e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.15e-21!169;UBERON:0000925!2.15e-21!169;UBERON:0006595!2.15e-21!169;UBERON:0001007!1.59e-18!155;UBERON:0001555!1.59e-18!155;UBERON:0007026!1.59e-18!155;UBERON:0004921!1.42e-15!129;UBERON:0004185!1.42e-15!129;UBERON:0001004!2.14e-15!72;UBERON:0000077!1.90e-14!130;UBERON:0000161!1.38e-12!35;UBERON:0000464!3.09e-12!104;UBERON:0005153!6.28e-11!37;UBERON:0000344!6.62e-11!12;UBERON:0001041!1.80e-10!98;UBERON:0000065!2.77e-10!53;UBERON:0005178!2.80e-10!34;UBERON:0002224!2.80e-10!34;UBERON:0000466!3.64e-10!126;UBERON:0005181!7.93e-10!35;UBERON:0005911!8.64e-10!82;UBERON:0000166!2.46e-09!21;UBERON:0005157!2.78e-08!51;UBERON:0003729!2.98e-08!5;UBERON:0002048!1.02e-07!22;UBERON:0000117!1.02e-07!22;UBERON:0000171!1.02e-07!22;UBERON:0000170!1.02e-07!22;UBERON:0005597!1.02e-07!22;UBERON:0000118!1.02e-07!22;UBERON:0000165!2.54e-07!28;UBERON:0000930!2.54e-07!28;UBERON:0000915!3.20e-07!52;UBERON:0003104!3.95e-07!238;UBERON:0009142!3.95e-07!238;UBERON:0003343!7.04e-07!4;UBERON:0004785!7.04e-07!4;UBERON:0000072!8.76e-07!46 | |ontology_enrichment_uberon=UBERON:0004119!2.15e-21!169;UBERON:0000925!2.15e-21!169;UBERON:0006595!2.15e-21!169;UBERON:0001007!1.59e-18!155;UBERON:0001555!1.59e-18!155;UBERON:0007026!1.59e-18!155;UBERON:0004921!1.42e-15!129;UBERON:0004185!1.42e-15!129;UBERON:0001004!2.14e-15!72;UBERON:0000077!1.90e-14!130;UBERON:0000161!1.38e-12!35;UBERON:0000464!3.09e-12!104;UBERON:0005153!6.28e-11!37;UBERON:0000344!6.62e-11!12;UBERON:0001041!1.80e-10!98;UBERON:0000065!2.77e-10!53;UBERON:0005178!2.80e-10!34;UBERON:0002224!2.80e-10!34;UBERON:0000466!3.64e-10!126;UBERON:0005181!7.93e-10!35;UBERON:0005911!8.64e-10!82;UBERON:0000166!2.46e-09!21;UBERON:0005157!2.78e-08!51;UBERON:0003729!2.98e-08!5;UBERON:0002048!1.02e-07!22;UBERON:0000117!1.02e-07!22;UBERON:0000171!1.02e-07!22;UBERON:0000170!1.02e-07!22;UBERON:0005597!1.02e-07!22;UBERON:0000118!1.02e-07!22;UBERON:0000165!2.54e-07!28;UBERON:0000930!2.54e-07!28;UBERON:0000915!3.20e-07!52;UBERON:0003104!3.95e-07!238;UBERON:0009142!3.95e-07!238;UBERON:0003343!7.04e-07!4;UBERON:0004785!7.04e-07!4;UBERON:0000072!8.76e-07!46 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.23e-11;33!UBERON:0001041;1.05e-09;14!UBERON:0000974;2.12e-08;6!UBERON:0000344;4.25e-08;20!UBERON:0001555;7.53e-08;54!UBERON:0003343;8.96e-08;4!UBERON:0004785;8.96e-08;4!UBERON:0005409;7.16e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.93e-11,160;UBERON:0000925,2.93e-11,160;UBERON:0006595,2.93e-11,160;UBERON:0004921,6.95e-11,118;UBERON:0001007,2.32e-10,145;UBERON:0001555,2.32e-10,145;UBERON:0007026,2.32e-10,145;UBERON:0000344,4.97e-08,20;UBERON:0003343,9.63e-08,4;UBERON:0004785,9.63e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91436230634034,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0.265059536642971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22988438543114,0,0.439001141634502,1.1240175325762,0.201057944823262,2.59247646443883,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0.93733833986777,0.16798212819886,0.425325291727159,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0.802025881213139,1.93370076765382,0,0,0,0,0.385076685522074,0,0,0.211103257785751,0,0,0,0,0,0,0.764628819135115,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,1.95018073810956,0,0,0,0.15350367472613,0,0,0,0.255679882248303,0.356128142586949,1.32227932288782,0.768760269460425,1.27612712494584,0.809262246844399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63577591633371,2.01090682660736,0,0.564862804660675,0.43050537267123,0,2.21715076768338,0,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36852972734796,0,0,0,0,1.43246690842614,0.296964680832639,1.53580351049616,0,0,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0.898683511473268,3.04335996948536,0,0.197286811273867,0,0,0,0,0,0.260427761085233,2.27395999990109,0,5.57587896598948,0.762760950878299,7.56440581657396,0,0,0.173624994933292,0,0,0,0,0,0,0,0.975966209950223,0.615602068030377,0,2.07507513949254,0.807818799687949,2.28159481036217,0.638002319463839,0.183195186803725,1.06606955203727,0,0,0,0.225595660617181,0,0,0.37950746544837,0,0,0.816164040795739,1.55488378577335,0,1.99052386215701,0.353830258013357,0.611030144933625,0,0,0,0.067401132980677,0,0,0,3.13063390291344,0,1.18375320854817,0,0,0,0,0,0,0,0,0,1.13843818411917,0,4.33899345837827,1.7638631534588,1.65412492502765,0.698906672968121,0,1.83837029449262,1.38869702463753,1.8065400551706,2.32773639572207,0,0.225980740780532,0,0,0,0.782205530939212,0.240476460754601,0.426905989478705,0,8.50133461209225,0,0,1.7286575758578,0,1.17847017308398,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5476039091159,0,0,0.157611414598396,0.524545881349981,0,0,0.959575986597226,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,3.52407511158336,0.961086713109252,0.314408610199332,0,0,0,0,7.021753835472,0,0,0,0,5.0257310800075,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47918486351039,0,0,0,0,0,1.95831310807222,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,3.23887471053385,7.66803201760312,0.917142992608395,2.07946199070609,0,0,0,0,0,3.12605604493237,0.523813388962845,0.163771917510097,2.06998520703863,0,0,0,0,0,1.09651553371436,0.496211178389294,0,1.53314913167514,0,0,0,0.227662191351298,0.620916591138472,0,0,0,0,0.118193840883968,3.78186766433035,1.25588948560822,0,3.92381028639305,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0,3.8720462293825,0,0,0.846774100381858,1.14553434272025,0,0,2.79638579494481,2.25745537315059,2.07260472469858,0,0,0,0.971421986118279,0,1.19370465096821,0,6.66381884029864,0,0.301925687133347,0,0,0,0,1.88541237681301,0,0,0,0,0,0.0644578879735772,0,1.42843150884526,0.352894871715692,0.882655033580851,1.46067277649303,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0,0,0,0,1.0661699095049,0.23806443146374,0.129177819672012,0,0,0.0636471582781649,0,0.653150243690884,0.342233301085281,1.0776328482334,1.5061663132462,0.99798106963804,0.325613074443898,0,0,0,0,0.122241444182866,0.813792356631477,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91436230634034,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0.265059536642971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22988438543114,0,0.439001141634502,1.1240175325762,0.201057944823262,2.59247646443883,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0.93733833986777,0.16798212819886,0.425325291727159,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0.802025881213139,1.93370076765382,0,0,0,0,0.385076685522074,0,0,0.211103257785751,0,0,0,0,0,0,0.764628819135115,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,1.95018073810956,0,0,0,0.15350367472613,0,0,0,0.255679882248303,0.356128142586949,1.32227932288782,0.768760269460425,1.27612712494584,0.809262246844399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63577591633371,2.01090682660736,0,0.564862804660675,0.43050537267123,0,2.21715076768338,0,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36852972734796,0,0,0,0,1.43246690842614,0.296964680832639,1.53580351049616,0,0,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0.898683511473268,3.04335996948536,0,0.197286811273867,0,0,0,0,0,0.260427761085233,2.27395999990109,0,5.57587896598948,0.762760950878299,7.56440581657396,0,0,0.173624994933292,0,0,0,0,0,0,0,0.975966209950223,0.615602068030377,0,2.07507513949254,0.807818799687949,2.28159481036217,0.638002319463839,0.183195186803725,1.06606955203727,0,0,0,0.225595660617181,0,0,0.37950746544837,0,0,0.816164040795739,1.55488378577335,0,1.99052386215701,0.353830258013357,0.611030144933625,0,0,0,0.067401132980677,0,0,0,3.13063390291344,0,1.18375320854817,0,0,0,0,0,0,0,0,0,1.13843818411917,0,4.33899345837827,1.7638631534588,1.65412492502765,0.698906672968121,0,1.83837029449262,1.38869702463753,1.8065400551706,2.32773639572207,0,0.225980740780532,0,0,0,0.782205530939212,0.240476460754601,0.426905989478705,0,8.50133461209225,0,0,1.7286575758578,0,1.17847017308398,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5476039091159,0,0,0.157611414598396,0.524545881349981,0,0,0.959575986597226,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,3.52407511158336,0.961086713109252,0.314408610199332,0,0,0,0,7.021753835472,0,0,0,0,5.0257310800075,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47918486351039,0,0,0,0,0,1.95831310807222,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,3.23887471053385,7.66803201760312,0.917142992608395,2.07946199070609,0,0,0,0,0,3.12605604493237,0.523813388962845,0.163771917510097,2.06998520703863,0,0,0,0,0,1.09651553371436,0.496211178389294,0,1.53314913167514,0,0,0,0.227662191351298,0.620916591138472,0,0,0,0,0.118193840883968,3.78186766433035,1.25588948560822,0,3.92381028639305,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0,3.8720462293825,0,0,0.846774100381858,1.14553434272025,0,0,2.79638579494481,2.25745537315059,2.07260472469858,0,0,0,0.971421986118279,0,1.19370465096821,0,6.66381884029864,0,0.301925687133347,0,0,0,0,1.88541237681301,0,0,0,0,0,0.0644578879735772,0,1.42843150884526,0.352894871715692,0.882655033580851,1.46067277649303,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0,0,0,0,1.0661699095049,0.23806443146374,0.129177819672012,0,0,0.0636471582781649,0,0.653150243690884,0.342233301085281,1.0776328482334,1.5061663132462,0.99798106963804,0.325613074443898,0,0,0,0,0.122241444182866,0.813792356631477,0,0,0 | ||
|short_description=p2@ENST00000534398 | |short_description=p2@ENST00000534398 | ||
}} | }} |
Latest revision as of 15:57, 31 July 2015
Short description: | p2@ENST00000534398 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ENST00000534398_5end |
Coexpression cluster: | NA |
Association with transcript: | -14bp_to_ENST00000534398_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.83e-22 | 42 |
epithelial cell | 8.77e-19 | 253 |
endodermal cell | 1.20e-16 | 58 |
epithelial cell of alimentary canal | 3.32e-13 | 20 |
corneal epithelial cell | 3.14e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.93e-11 | 160 |
endoderm | 2.93e-11 | 160 |
presumptive endoderm | 2.93e-11 | 160 |
subdivision of digestive tract | 6.95e-11 | 118 |
digestive system | 2.32e-10 | 145 |
digestive tract | 2.32e-10 | 145 |
primitive gut | 2.32e-10 | 145 |
mucosa | 4.97e-08 | 20 |
mucosa of oral region | 9.63e-08 | 4 |
respiratory system mucosa | 9.63e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.20e-23 | 106 |
cell type cancer | 1.01e-18 | 143 |
squamous cell carcinoma | 6.28e-16 | 14 |
adenocarcinoma | 1.68e-14 | 25 |
cancer | 3.27e-09 | 235 |
disease of cellular proliferation | 7.89e-09 | 239 |
gastrointestinal system cancer | 3.95e-07 | 14 |
signet ring cell adenocarcinoma | 5.09e-07 | 2 |