FFCP PHASE1:Hg19::chr8:22442625..22442635,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:22442625..22442635,+ to FFCP PHASE1:Hg19::chr8:22442625..22442635,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr8:22442625..22442635,+ | |||
|coexpression_cluster_id=C4743 | |||
|description=CAGE_peak_at_chr8:22442625..22442635,+ | |||
|id=chr8:22442625..22442635,+ | |||
|ontology_enrichment_celltype=CL:0002334!2.35e-08!12;CL:1000507!3.48e-07!12;CL:1000494!3.48e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.36e-26;19!CL:0002577;3.71e-15;3!CL:0000039;2.59e-14;7!CL:0000586;2.59e-14;7!CL:0002581;1.07e-11;1!CL:0000153;4.69e-11;9!CL:0000447;4.69e-11;9!CL:0002537;1.34e-09;5!CL:0000138;5.95e-08;6!CL:0000327;7.80e-07;15!CL:1000746;7.86e-07;7!CL:1000612;7.86e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,8.57e-27,19;CL:0002577,2.80e-15,3;CL:0000039,3.04e-14,7;CL:0000586,3.04e-14,7;CL:0002581,9.61e-12,1;CL:0000153,5.57e-11,9;CL:0000447,5.57e-11,9;CL:0002537,1.36e-09,5;CL:0000058,6.60e-08,6;CL:0000138,6.60e-08,6;CL:1000746,8.59e-07,7;CL:1000612,8.59e-07,7;CL:0000327,8.64e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.47e-10;10!UBERON:0005564;3.47e-10;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.34e-13!14;UBERON:0000158!2.34e-13!14;UBERON:0000478!8.15e-11!24;UBERON:0003124!9.29e-09!7;UBERON:0003886!1.55e-08!63;UBERON:0004923!8.84e-08!57;UBERON:0001851!1.21e-07!16;UBERON:0003887!1.36e-07!21;UBERON:0002113!1.51e-07!27;UBERON:0003918!1.51e-07!27;UBERON:0005095!1.51e-07!27;UBERON:0007687!1.51e-07!27;UBERON:0006555!2.71e-07!17;UBERON:0005103!2.71e-07!17;UBERON:0000083!2.71e-07!17;UBERON:0009201!2.71e-07!17;UBERON:0004819!2.71e-07!17;UBERON:0006553!2.71e-07!17;UBERON:0003074!2.71e-07!17;UBERON:0003060!2.71e-07!17;UBERON:0009773!3.48e-07!12;UBERON:0001231!3.48e-07!12;UBERON:0004810!3.48e-07!12;UBERON:0002553!5.05e-07!70;UBERON:0000080!9.33e-07!18;UBERON:0002120!9.33e-07!18;UBERON:0004875!9.33e-07!18;UBERON:0005721!9.33e-07!18;UBERON:0005754!9.33e-07!18;UBERON:0007297!9.33e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;6.19e-21;24!UBERON:0005631;3.70e-17;10!UBERON:0000158;3.70e-17;10!UBERON:0000305;2.71e-14;7!UBERON:0000473;1.35e-12;8!UBERON:0007195;5.32e-12;1!UBERON:0001987;1.32e-11;4!UBERON:0003135;2.62e-09;11!UBERON:0000074;7.86e-07;7!UBERON:0001229;7.86e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.20e-27,14;UBERON:0000158,5.20e-27,14;UBERON:0000478,4.31e-21,24;UBERON:0000305,2.21e-14,7;UBERON:0003124,2.77e-14,7;UBERON:0004871,1.18e-12,8;UBERON:0000473,1.55e-12,8;UBERON:0007195,5.62e-12,1;UBERON:0001987,1.07e-11,4;UBERON:0004340,1.07e-11,4;UBERON:0004923,2.55e-09,66;UBERON:0003135,2.90e-09,11;UBERON:0010532,8.59e-07,7;UBERON:0000074,8.59e-07,7;UBERON:0001229,8.59e-07,7;UBERON:0001230,8.59e-07,7;UBERON:0003220,8.59e-07,7;UBERON:0005749,8.59e-07,7;UBERON:0004199,8.59e-07,7;UBERON:0004209,8.59e-07,7;UBERON:0004198,8.59e-07,7 | |||
|phase1_expression=0,0.214100523890983,0.986680828671798,0,0,0,0,0,0,0,0,1.96597234917155,0.791300934685361,0.247532705920093,0.331397375727916,0,0,0,0,0.123121058076788,1.42800483870977,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0.212604299965044,0,0.336985893439485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.0843174571537,3.00802746381534,0.724232594804119,0,0,0.189069634328136,0.443458794925128,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0.103052529238439,0,0.37223371266318,0,0,0,0.184099797284599,0.161646056818812,0,0,0.169560592310488,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0.36497735907583,0,0.643240938192885,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718874566474748,2.29723871668228,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0.831883446123229,0.892144943985809,0.315404830067869,0.819989904948992,0,0,0,0,0.184369168541703,0.0868836144680828,0.195801157462741,0,0,0,0,8.18444442904901,1.66435439510497,0.907170879989041,0.496215615637554,0.153461973288062,0.280660094433074,0.768834895534206,0,0.160853921143607,1.48418066444991,0,0.532685175939381,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0.451199612907412,0.0770153371044148,0.784349769176855,0,0,0,0,0,1.54227252690289,0.541892875087706,1.00337954770971,0.254876273045038,0.831076008928724,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0.929691098594572,0,0,0,0,0,0,0.143124886741991,0.744316738719335,0,0,0.255897791311334,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633322905892992,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0.111443384277478,0,4.53614521001611,5.04839957415486,0.614321404198464,0,0,0,0,0,0,0.276283915531148,0,0,0,0.311039587661807,0.0898683511473268,0,0,0.0986434056369336,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,1.5950057986596,0.457987967009312,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.17472666824203,0.171986032471617,0,0.0730893170861856,0.0821154570532092,0,0,0,0,0,0,0,0,0.213452994739353,0.19980960958213,0,0.114536596165916,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.275078873194468,0,0,0,0,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0.690860683462397,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0.558644917973244,0.318004350653419,0,0,0.352675943690684,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0.339854229375634,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0.924351257262837,0,0.630832124175395,0,0,6.62927393322881,1.06886962106224,4.87042967534678,0,0,0.267964130156178,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.214100523890983,0.986680828671798,0,0,0,0,0,0,0,0,1.96597234917155,0.791300934685361,0.247532705920093,0.331397375727916,0,0,0,0,0.123121058076788,1.42800483870977,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0.212604299965044,0,0.336985893439485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.0843174571537,3.00802746381534,0.724232594804119,0,0,0.189069634328136,0.443458794925128,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0.103052529238439,0,0.37223371266318,0,0,0,0.184099797284599,0.161646056818812,0,0,0.169560592310488,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0.36497735907583,0,0.643240938192885,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718874566474748,2.29723871668228,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0.831883446123229,0.892144943985809,0.315404830067869,0.819989904948992,0,0,0,0,0.184369168541703,0.0868836144680828,0.195801157462741,0,0,0,0,8.18444442904901,1.66435439510497,0.907170879989041,0.496215615637554,0.153461973288062,0.280660094433074,0.768834895534206,0,0.160853921143607,1.48418066444991,0,0.532685175939381,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0.451199612907412,0.0770153371044148,0.784349769176855,0,0,0,0,0,1.54227252690289,0.541892875087706,1.00337954770971,0.254876273045038,0.831076008928724,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0.929691098594572,0,0,0,0,0,0,0.143124886741991,0.744316738719335,0,0,0.255897791311334,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633322905892992,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0.111443384277478,0,4.53614521001611,5.04839957415486,0.614321404198464,0,0,0,0,0,0,0.276283915531148,0,0,0,0.311039587661807,0.0898683511473268,0,0,0.0986434056369336,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,1.5950057986596,0.457987967009312,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.17472666824203,0.171986032471617,0,0.0730893170861856,0.0821154570532092,0,0,0,0,0,0,0,0,0.213452994739353,0.19980960958213,0,0.114536596165916,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.275078873194468,0,0,0,0,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0.690860683462397,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0.558644917973244,0.318004350653419,0,0,0.352675943690684,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0.339854229375634,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0.924351257262837,0,0.630832124175395,0,0,6.62927393322881,1.06886962106224,4.87042967534678,0,0,0.267964130156178,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr8:22442625..22442635,+ | |||
}} | }} |
Latest revision as of 16:59, 31 July 2015
Short description: | p@chr8:22442625..22442635, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:22442625..22442635, + |
Coexpression cluster: | C4743_Placental_amniotic_testicular_chorionic_Olfactory_Synoviocyte_Amniotic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 8.57e-27 | 19 |
placental epithelial cell | 2.80e-15 | 3 |
germ line cell | 3.04e-14 | 7 |
germ cell | 3.04e-14 | 7 |
perirenal preadipocyte | 9.61e-12 | 1 |
GAG secreting cell | 5.57e-11 | 9 |
carbohydrate secreting cell | 5.57e-11 | 9 |
amnion mesenchymal stem cell | 1.36e-09 | 5 |
chondroblast | 6.60e-08 | 6 |
chondrocyte | 6.60e-08 | 6 |
glomerular cell | 8.59e-07 | 7 |
kidney corpuscule cell | 8.59e-07 | 7 |
extracellular matrix secreting cell | 8.64e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.20e-27 | 14 |
membranous layer | 5.20e-27 | 14 |
extraembryonic structure | 4.31e-21 | 24 |
amnion | 2.21e-14 | 7 |
chorion | 2.77e-14 | 7 |
somatic layer of lateral plate mesoderm | 1.18e-12 | 8 |
testis | 1.55e-12 | 8 |
stroma of bone marrow | 5.62e-12 | 1 |
placenta | 1.07e-11 | 4 |
allantois | 1.07e-11 | 4 |
organ component layer | 2.55e-09 | 66 |
male reproductive organ | 2.90e-09 | 11 |
primitive nephron | 8.59e-07 | 7 |
renal glomerulus | 8.59e-07 | 7 |
renal corpuscle | 8.59e-07 | 7 |
glomerular capsule | 8.59e-07 | 7 |
metanephric mesenchyme | 8.59e-07 | 7 |
glomerular tuft | 8.59e-07 | 7 |
S-shaped body | 8.59e-07 | 7 |
renal vesicle | 8.59e-07 | 7 |
comma-shaped body | 8.59e-07 | 7 |