FFCP PHASE1:Hg19::chr9:108870138..108870152,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-179bp_to_uc004bcw.2_5end | |||
|cluster_id=chr9:108870138..108870152,+ | |||
|coexpression_cluster_id=C405 | |||
|description=CAGE_peak_1_at_uc004bcw.2_5end | |||
|id=chr9:108870138..108870152,+ | |||
|ontology_enrichment_celltype=CL:0002621!3.01e-20!3;CL:0002231!1.15e-19!3;CL:0000362!1.14e-16!8;CL:0000312!2.38e-12!5;CL:0000622!2.67e-12!5;CL:0002076!1.26e-11!43;CL:0002251!3.54e-11!21;CL:0002077!7.32e-11!33;CL:0002159!1.70e-10!13;CL:0000240!1.90e-10!6;CL:0000311!1.90e-10!6;CL:0000079!1.90e-10!6;CL:0000237!1.90e-10!6;CL:0000036!1.90e-10!6;CL:0000357!1.90e-10!6;CL:0000114!1.90e-10!6;CL:0000154!2.09e-10!6;CL:0000066!1.27e-09!254;CL:0000317!1.61e-08!2;CL:1000448!1.61e-08!2;CL:0002308!1.61e-08!2;CL:0002140!1.61e-08!2;CL:0002252!1.86e-08!2;CL:0000223!2.15e-08!59;CL:0000150!3.14e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002621;6.53e-66;3!CL:0000149;1.00e-13;4!CL:0000312;2.66e-11;5!CL:0002251;6.30e-11;20!CL:0000240;1.22e-09;6!CL:0000311;1.22e-09;6!CL:0000079;1.22e-09;6!CL:0000237;1.22e-09;6!CL:0002077;3.37e-07;34!CL:0000362;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,6.53e-66,3;CL:0000149,1.00e-13,4;CL:0000312,2.66e-11,5;CL:0002251,6.30e-11,20;CL:0000240,1.22e-09,6;CL:0000311,1.22e-09,6;CL:0000079,1.22e-09,6;CL:0000237,1.22e-09,6;CL:0000036,1.22e-09,6;CL:0000357,1.22e-09,6;CL:0000114,1.22e-09,6;CL:0002077,6.75e-07,34;CL:0000362,7.48e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;1.22e-09;6!CL:0000114;1.22e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!3.01e-20!3;UBERON:0000161!3.88e-10!35;UBERON:0001003!8.70e-10!14;UBERON:0007376!8.70e-10!14;UBERON:0007383!8.70e-10!14;UBERON:0003102!7.27e-09!95;UBERON:0002419!1.61e-08!2;UBERON:0007771!1.61e-08!2;UBERON:0003297!1.61e-08!2;UBERON:0001821!1.61e-08!2;UBERON:0003487!1.61e-08!2;UBERON:0001820!1.61e-08!2;UBERON:0005089!1.61e-08!2;UBERON:0005088!1.61e-08!2;UBERON:0001828!3.51e-08!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;6.53e-66;3!UBERON:0003929;4.86e-29;7!UBERON:0003350;1.43e-25;8!UBERON:0001828;1.43e-25;8!UBERON:0000486;1.85e-17;12!UBERON:0003729;3.31e-16;13!UBERON:0010371;1.01e-15;31!UBERON:0000161;1.91e-11;19!UBERON:0000166;1.91e-11;19!UBERON:0000344;6.30e-11;20!UBERON:0004807;4.96e-10;22!UBERON:0000165;4.21e-08;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,6.53e-66,3;UBERON:0003350,1.43e-25,8;UBERON:0001828,1.43e-25,8;UBERON:0003729,3.31e-16,13;UBERON:0000344,6.30e-11,20;UBERON:0000166,4.96e-10,22;UBERON:0004807,4.21e-08,28;UBERON:0000165,7.40e-08,29;UBERON:0000930,7.40e-08,29 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12586938479627,0,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.68251997860379,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,4.20480280981484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.368323955743585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@uc004bcw.2 | |||
}} |
Latest revision as of 21:27, 31 July 2015
Short description: | p1@uc004bcw.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc004bcw.2_5end |
Coexpression cluster: | C405_Keratinocyte_Mammary_Sebocyte_tongue_Corneal_Mallassezderived_Gingival |
Association with transcript: | -179bp_to_uc004bcw.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 6.53e-66 | 3 |
visual pigment cell | 1.00e-13 | 4 |
keratinocyte | 2.66e-11 | 5 |
epithelial cell of alimentary canal | 6.30e-11 | 20 |
stratified squamous epithelial cell | 1.22e-09 | 6 |
keratin accumulating cell | 1.22e-09 | 6 |
stratified epithelial cell | 1.22e-09 | 6 |
keratinizing barrier epithelial cell | 1.22e-09 | 6 |
epithelial fate stem cell | 1.22e-09 | 6 |
stratified epithelial stem cell | 1.22e-09 | 6 |
surface ectodermal cell | 1.22e-09 | 6 |
ecto-epithelial cell | 6.75e-07 | 34 |
epidermal cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 6.53e-66 | 3 |
epithelium of mucosa | 1.43e-25 | 8 |
gingiva | 1.43e-25 | 8 |
mouth mucosa | 3.31e-16 | 13 |
mucosa | 6.30e-11 | 20 |
oral opening | 4.96e-10 | 22 |
respiratory system epithelium | 4.21e-08 | 28 |
mouth | 7.40e-08 | 29 |
stomodeum | 7.40e-08 | 29 |