FFCP PHASE1:Hg19::chr9:129830560..129830568,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr9:129830560..129830568,+ | |||
|coexpression_cluster_id=C228 | |||
|description=CAGE_peak_at_chr9:129830560..129830568,+ | |||
|id=chr9:129830560..129830568,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.21e-16!4;CL:0002076!1.17e-12!43;CL:0002253!3.43e-09!2;CL:0000223!3.70e-09!59;CL:0002251!2.95e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002563;2.40e-66;4!CL:0002253;3.61e-34;2!CL:0002231;4.09e-23;3!CL:0002076;8.69e-16;42!CL:0002251;2.41e-14;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.40e-66,4;CL:0002253,3.61e-34,2;CL:0002231,4.09e-23,3;CL:0002076,3.52e-15,42;CL:0002251,2.41e-14,20;CL:0000223,2.67e-11,58 | |||
|ontology_enrichment_development_v019=CL:0000223;2.55e-07;58 | |||
|ontology_enrichment_disease=DOID:3151!1.41e-16!1;DOID:3149!1.41e-16!1;DOID:1325!1.47e-09!7;DOID:3904!1.47e-09!7;DOID:4929!4.34e-09!2;DOID:3451!5.94e-09!2;DOID:4159!5.94e-09!2;DOID:0060122!5.94e-09!2;DOID:3910!6.94e-09!2;DOID:3905!1.25e-07!9 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004913!7.57e-17!1;UBERON:0003703!7.57e-17!1;UBERON:0001174!7.57e-17!1;UBERON:0004914!7.57e-17!1;UBERON:0001242!1.21e-16!4;UBERON:0001262!1.21e-16!4;UBERON:0004786!1.21e-16!4;UBERON:0004808!1.21e-16!4;UBERON:0001277!1.21e-16!4;UBERON:0002372!3.07e-16!1;UBERON:0001961!3.07e-16!1;UBERON:0001744!3.07e-16!1;UBERON:0001735!3.07e-16!1;UBERON:0003350!1.63e-13!5;UBERON:0000060!3.09e-12!12;UBERON:0000344!3.46e-12!12;UBERON:0004921!7.44e-11!129;UBERON:0004185!7.44e-11!129;UBERON:0004903!6.94e-09!2;UBERON:0002173!6.94e-09!2;UBERON:0002186!6.94e-09!2;UBERON:0001007!7.05e-09!155;UBERON:0001555!7.05e-09!155;UBERON:0007026!7.05e-09!155;UBERON:0005911!9.88e-09!82;UBERON:0004119!4.63e-08!169;UBERON:0000925!4.63e-08!169;UBERON:0006595!4.63e-08!169;UBERON:0001046!6.17e-08!19;UBERON:0000485!6.55e-08!9;UBERON:0005409!3.35e-07!35;UBERON:0003929!3.47e-07!54;UBERON:0000077!7.28e-07!130;UBERON:0005153!7.34e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0001242;2.40e-66;4!UBERON:0001262;2.40e-66;4!UBERON:0004786;2.40e-66;4!UBERON:0004808;2.40e-66;4!UBERON:0001277;2.40e-66;4!UBERON:0000485;1.49e-38;7!UBERON:0003929;1.49e-38;7!UBERON:0003350;6.50e-34;8!UBERON:0001052;7.35e-18;4!UBERON:0000160;8.40e-16;17!UBERON:0004907;1.40e-14;5!UBERON:0000344;2.41e-14;20!UBERON:0005409;1.25e-12;22!UBERON:0004921;2.68e-09;33!UBERON:0001155;1.04e-08;9!UBERON:0005911;1.21e-08;36!UBERON:0000490;1.21e-08;33!UBERON:0000059;2.32e-07;11!UBERON:0002367;2.63e-07;11!UBERON:0010147;2.63e-07;11!UBERON:0003937;8.38e-07;12!UBERON:0005399;8.38e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,2.40e-66,4;UBERON:0001262,2.40e-66,4;UBERON:0004786,2.40e-66,4;UBERON:0004808,2.40e-66,4;UBERON:0001277,2.40e-66,4;UBERON:0003350,6.50e-34,8;UBERON:0000485,2.66e-30,9;UBERON:0001052,7.35e-18,4;UBERON:0000160,8.40e-16,17;UBERON:0001046,5.27e-15,19;UBERON:0004907,1.40e-14,5;UBERON:0000344,2.41e-14,20;UBERON:0003929,4.68e-12,54;UBERON:0005409,2.63e-11,25;UBERON:0001155,1.04e-08,9;UBERON:0005911,2.70e-08,82;UBERON:0000059,2.32e-07,11;UBERON:0002367,2.63e-07,11;UBERON:0010147,2.63e-07,11;UBERON:0009846,2.63e-07,11;UBERON:0003353,2.63e-07,11;UBERON:0004902,2.63e-07,11;UBERON:0003820,2.63e-07,11;UBERON:0009847,2.63e-07,11;UBERON:0003937,8.38e-07,12;UBERON:0005399,8.38e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.30459534900897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.78494742882916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0.333694205676207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p@chr9:129830560..129830568,+ | |||
}} |
Latest revision as of 22:49, 31 July 2015
Short description: | p@chr9:129830560..129830568, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:129830560..129830568, + |
Coexpression cluster: | C228_colon_Intestinal_Prostate_hepatoblastoma_hepatocellular_testis_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.40e-66 | 4 |
epithelial cell of large intestine | 3.61e-34 | 2 |
epithelial cell of prostate | 4.09e-23 | 3 |
endo-epithelial cell | 3.52e-15 | 42 |
epithelial cell of alimentary canal | 2.41e-14 | 20 |
endodermal cell | 2.67e-11 | 58 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 2.40e-66 | 4 |
wall of intestine | 2.40e-66 | 4 |
gastrointestinal system mucosa | 2.40e-66 | 4 |
gastrointestinal system epithelium | 2.40e-66 | 4 |
intestinal epithelium | 2.40e-66 | 4 |
epithelium of mucosa | 6.50e-34 | 8 |
simple columnar epithelium | 2.66e-30 | 9 |
rectum | 7.35e-18 | 4 |
intestine | 8.40e-16 | 17 |
hindgut | 5.27e-15 | 19 |
lower digestive tract | 1.40e-14 | 5 |
mucosa | 2.41e-14 | 20 |
gut epithelium | 4.68e-12 | 54 |
gastrointestinal system | 2.63e-11 | 25 |
colon | 1.04e-08 | 9 |
endo-epithelium | 2.70e-08 | 82 |
large intestine | 2.32e-07 | 11 |
prostate gland | 2.63e-07 | 11 |
male accessory sex gland | 2.63e-07 | 11 |
embryonic cloacal epithelium | 2.63e-07 | 11 |
epithelium of hindgut | 2.63e-07 | 11 |
urogenital sinus epithelium | 2.63e-07 | 11 |
prostate bud | 2.63e-07 | 11 |
prostate field | 2.63e-07 | 11 |
sex gland | 8.38e-07 | 12 |
male reproductive gland | 8.38e-07 | 12 |