FFCP PHASE1:Hg19::chr9:131446064..131446082,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=6418 | |EntrezGene=entrezgene:6418 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=10760 | |HGNC=HGNC:10760 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=Q01105,Q5VXV3 | |UniProt=uniprot:Q01105,uniprot:Q5VXV3 | ||
|association_with_transcript=130bp_to_ENST00000372692,NM_001122821,uc004bvt.3_5end | |association_with_transcript=130bp_to_ENST00000372692,NM_001122821,uc004bvt.3_5end | ||
|cluster_id=chr9:131446064..131446082,+ | |||
|description=CAGE_peak_3_at_SET_5end | |description=CAGE_peak_3_at_SET_5end | ||
|id=chr9:131446064..131446082,+ | |id=chr9:131446064..131446082,+ | ||
Revision as of 23:16, 31 July 2015
| Short description: | p3@SET |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_SET_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 130bp_to_ENST00000372692, NM_001122821, uc004bvt.3_5end |
| EntrezGene: | 6418 |
| HGNC: | 10760 |
| UniProt: | Q01105Q5VXV3 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@SET |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 8.52e-41 | 253 |
| embryonic cell | 1.01e-15 | 250 |
| endo-epithelial cell | 6.49e-13 | 42 |
| endodermal cell | 8.70e-13 | 58 |
| squamous epithelial cell | 5.52e-09 | 63 |
| mesothelial cell | 5.58e-09 | 19 |
| epithelial cell of alimentary canal | 1.24e-08 | 20 |
Showing 1 to 7 of 7 entries
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 1.43e-10 | 160 |
| endoderm | 1.43e-10 | 160 |
| presumptive endoderm | 1.43e-10 | 160 |
| digestive system | 3.19e-09 | 145 |
| digestive tract | 3.19e-09 | 145 |
| primitive gut | 3.19e-09 | 145 |
| respiratory primordium | 2.15e-08 | 38 |
| endoderm of foregut | 2.15e-08 | 38 |
| subdivision of digestive tract | 1.52e-07 | 118 |
| respiratory system | 2.59e-07 | 74 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| cell type cancer | 1.34e-31 | 143 |
| disease of cellular proliferation | 1.32e-30 | 239 |
| cancer | 7.26e-30 | 235 |
| carcinoma | 4.76e-27 | 106 |
| germ cell and embryonal cancer | 3.90e-08 | 22 |
| germ cell cancer | 3.90e-08 | 22 |
| adenocarcinoma | 2.92e-07 | 25 |
| squamous cell carcinoma | 5.52e-07 | 14 |
Showing 1 to 8 of 8 entries
