FFCP PHASE1:Mm9::chr6:116288391..116288410,+: Difference between revisions
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{{FFCP|EntrezGene=71779|HGNC=|MCL_coexpression_id=12|UniProt=Q9DBD2|association_with_transcript=250bp_to_NM_027920,uc009dkb.1_5end|description=CAGE_peak_4_at_March8_5end|id=chr6:116288391..116288410,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000066,1.49e-10,25;CL:0000239,1.71e-10,6;CL:0000677,1.71e-10,6;CL:0000584,1.71e-10,6;CL:0000075,7.36e-09,7;CL:0000223,3.46e-08,20;CL:0000182,4.30e-08,5|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!3.72e-12!43;UBERON:0005409!1.79e-11!59;UBERON:0004923!4.40e-09!24;UBERON:0005172!8.30e-08!49;UBERON:0005173!8.30e-08!49;UBERON:0002417!8.30e-08!49;UBERON:0000916!8.30e-08!49;UBERON:0009854!3.91e-07!23;UBERON:0009856!3.91e-07!23;UBERON:0000344!4.04e-07!15|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.86e-23,31;UBERON:0005409,2.92e-17,47;UBERON:0000344,1.77e-15,15;UBERON:0001007,3.81e-14,116;UBERON:0001555,3.81e-14,116;UBERON:0007026,3.81e-14,116;UBERON:0004119,9.89e-14,118;UBERON:0000925,9.89e-14,118;UBERON:0006595,9.89e-14,118;UBERON:0004923,2.56e-13,24;UBERON:0001242,1.80e-12,13;UBERON:0001262,1.80e-12,13;UBERON:0004786,1.80e-12,13;UBERON:0004921,2.10e-12,114;UBERON:0009854,1.56e-10,23;UBERON:0009856,1.56e-10,23;UBERON:0002107,2.10e-09,22;UBERON:0007499,2.10e-09,22;UBERON:0006925,2.10e-09,22;UBERON:0009497,2.10e-09,22;UBERON:0000015,2.10e-09,22;UBERON:0002423,2.10e-09,22;UBERON:0006235,2.10e-09,22;UBERON:0008835,2.10e-09,22;UBERON:0003894,2.10e-09,22;UBERON:0004161,2.10e-09,22;UBERON:0008836,2.10e-09,22;UBERON:0002365,6.40e-08,25;UBERON:0002330,6.40e-08,25;UBERON:0002108,9.10e-08,4|phase1_expression=0,8.37540978334467,16.8349718574128,18.4503168897166,25.0447864973174,1.17515490338323,1.16806320297763,0,0,0,0,0,0,0,0.666219523631325,1.61980213911861,1.39912375625629,0.315462165358238,0,0,0.425216450755349,0,0,8.15961356246374,7.34109699414944,9.76194338995534,7.32295393470427,4.52489588640367,7.9809836171677,11.5933859689568,2.43903561720835,0,0,15.8481681015439,0,0.166234645358492,0,0.418531630736908,0,0,0.588231488031014,0,0,0.125896817975577,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0,0,0,0,0,0.7104801149461,0,0,0.207379224616955,0,0,0,0,0.122490799214954,0,0.919218786610021,0,0,0,0.131886287730194,0.457438218012048,0,0.279182999001381,0.56276261003168,0.45839474333043,0,0,0.559198337475902,0.075726193333184,0,1.15945795480671,0,2.03991400112325,3.2382191498269,3.24888208723835,4.48026887097336,2.10666630197628,0,0,0,0,0,0,0,0,0,0,2.51204535381932,0,0.148442139064825,0,0.304465478312141,0,0.150722640552623,0.23517741427141,0.376999773989026,1.48316980640624,0,0,0.485300549842228,0,0,3.72783522436244,0,0.209446706813455,10.2182822083437,0,0,0,0,0,0.125654352112864,0,0.255715457330331,0,0.162241263067758,0.101839363850316,0.497627882440372,0.252722758433675,0,0,0,0,0,0.0680364991513279,0,0,0.258703370739016,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0.234526059981096,0.36012412292203,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.411618449517138,33.3722970813636,19.8337924997658,0,0,0,0.201683524623343,0.889512175379481,1.90225626112559,9.96511029243474,1.97638745668813,1.25667604400135,1.1937388322469,0.779856348476481,13.4822911298133,7.99710784536369,6.17337947088538,0.569003702859245,0.114248512609729,0,0,0,0.420814919341911,0.505892296994058,1.77132177575523,0.941992367048249,0.863780147452604,4.74324203339438,1.16791574001266,0.982794975566015,2.24862112384854,2.43432145666204,2.41177159752417,2.5462585178142,1.15078454980324,0.810676133875177,0.549122826376163,0,0.372140947668503,0.312037673114561,0,1.25578189465339,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0.159454768657487,0.163863314715738,0,0.144649058581512,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0.283880170416537,0.35613120733451,0.325773918707152,0,1.32745138339963,0.242780636154981,0.302323556964751,0.754420319023592,0,0,0.775284879504663,0.363533729477506,0,0.632073515871632,2.10837217149998,1.03135543248187,1.02131881726136,0,0.388076051348264,0.214337035031592,0.354680467284547,0.356737635204141,0.329098041204242,1.2178597964584,0.469343416127421,0.42366414172764,0,0,0,0,0,0.164140899745061,7.57850175237612,0,0.512612642393558,0,0.370389054739423,1.88368457004691,0.820165366326151,1.83022538565218,0,0.139951452323658,0,0,0,0,0.216010681643603,0,0.655087691238533,0.404593039154462,0.0826534557253359,0,1.16653475962614,0,0,0,0.165458490457098,0.388902376688095,0,0.675824501963113,0.352071715937262,0.2604087696879,1.36317147753424,0.483168241652012,0.288030006257865,0,0,0,0,0,0,0,0.147689527174577,0,0,0.100826185136841,0,0.0962118416403295,0,0.226730383615211,0,0.0897138566094757,0,0.19318959403219,0.187682475451182,0.183151624267265,0.428736758158132,0.501572104035363,0,0,0,0,0,0,0,0,0,0.51776031175182,0,0,0.170733605754134,0,0,0.367687016900028,0.666740183404846,0.206035057238894,0.320919209591815,0.252697211763798,0.50695859978048,0.565879024158229,0.0936415074698824,0.0640251524048693,0.287177344778066,0.476293691283074,0.347652977834566,0.192909220463705,0,0.735994600671987,0.342869252385415,0.177475806159338,0,0.436039249896986,0.188218760830661,0.169229215783353,0.182927972872773,0.263069711437843,0,0.561142271657738,0.237270036248348,0.197008964751127,0.409231043169689,0.309873682371932,0,0.499621155875892,0.233931608445408,0,0.191288332068843,0.661774257358546,0.231867835620421|short_description=p4@March8}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:71779 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9DBD2 | |||
|association_with_transcript=250bp_to_NM_027920,uc009dkb.1_5end | |||
|cluster_id=chr6:116288391..116288410,+ | |||
|description=CAGE_peak_4_at_March8_5end | |||
|id=chr6:116288391..116288410,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.49e-10,25;CL:0000239,1.71e-10,6;CL:0000677,1.71e-10,6;CL:0000584,1.71e-10,6;CL:0000075,7.36e-09,7;CL:0000223,3.46e-08,20;CL:0000182,4.30e-08,5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.72e-12!43;UBERON:0005409!1.79e-11!59;UBERON:0004923!4.40e-09!24;UBERON:0005172!8.30e-08!49;UBERON:0005173!8.30e-08!49;UBERON:0002417!8.30e-08!49;UBERON:0000916!8.30e-08!49;UBERON:0009854!3.91e-07!23;UBERON:0009856!3.91e-07!23;UBERON:0000344!4.04e-07!15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.86e-23,31;UBERON:0005409,2.92e-17,47;UBERON:0000344,1.77e-15,15;UBERON:0001007,3.81e-14,116;UBERON:0001555,3.81e-14,116;UBERON:0007026,3.81e-14,116;UBERON:0004119,9.89e-14,118;UBERON:0000925,9.89e-14,118;UBERON:0006595,9.89e-14,118;UBERON:0004923,2.56e-13,24;UBERON:0001242,1.80e-12,13;UBERON:0001262,1.80e-12,13;UBERON:0004786,1.80e-12,13;UBERON:0004921,2.10e-12,114;UBERON:0009854,1.56e-10,23;UBERON:0009856,1.56e-10,23;UBERON:0002107,2.10e-09,22;UBERON:0007499,2.10e-09,22;UBERON:0006925,2.10e-09,22;UBERON:0009497,2.10e-09,22;UBERON:0000015,2.10e-09,22;UBERON:0002423,2.10e-09,22;UBERON:0006235,2.10e-09,22;UBERON:0008835,2.10e-09,22;UBERON:0003894,2.10e-09,22;UBERON:0004161,2.10e-09,22;UBERON:0008836,2.10e-09,22;UBERON:0002365,6.40e-08,25;UBERON:0002330,6.40e-08,25;UBERON:0002108,9.10e-08,4 | |||
|phase1_expression=0,8.37540978334467,16.8349718574128,18.4503168897166,25.0447864973174,1.17515490338323,1.16806320297763,0,0,0,0,0,0,0,0.666219523631325,1.61980213911861,1.39912375625629,0.315462165358238,0,0,0.425216450755349,0,0,8.15961356246374,7.34109699414944,9.76194338995534,7.32295393470427,4.52489588640367,7.9809836171677,11.5933859689568,2.43903561720835,0,0,15.8481681015439,0,0.166234645358492,0,0.418531630736908,0,0,0.588231488031014,0,0,0.125896817975577,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0,0,0,0,0,0.7104801149461,0,0,0.207379224616955,0,0,0,0,0.122490799214954,0,0.919218786610021,0,0,0,0.131886287730194,0.457438218012048,0,0.279182999001381,0.56276261003168,0.45839474333043,0,0,0.559198337475902,0.075726193333184,0,1.15945795480671,0,2.03991400112325,3.2382191498269,3.24888208723835,4.48026887097336,2.10666630197628,0,0,0,0,0,0,0,0,0,0,2.51204535381932,0,0.148442139064825,0,0.304465478312141,0,0.150722640552623,0.23517741427141,0.376999773989026,1.48316980640624,0,0,0.485300549842228,0,0,3.72783522436244,0,0.209446706813455,10.2182822083437,0,0,0,0,0,0.125654352112864,0,0.255715457330331,0,0.162241263067758,0.101839363850316,0.497627882440372,0.252722758433675,0,0,0,0,0,0.0680364991513279,0,0,0.258703370739016,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0.234526059981096,0.36012412292203,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.411618449517138,33.3722970813636,19.8337924997658,0,0,0,0.201683524623343,0.889512175379481,1.90225626112559,9.96511029243474,1.97638745668813,1.25667604400135,1.1937388322469,0.779856348476481,13.4822911298133,7.99710784536369,6.17337947088538,0.569003702859245,0.114248512609729,0,0,0,0.420814919341911,0.505892296994058,1.77132177575523,0.941992367048249,0.863780147452604,4.74324203339438,1.16791574001266,0.982794975566015,2.24862112384854,2.43432145666204,2.41177159752417,2.5462585178142,1.15078454980324,0.810676133875177,0.549122826376163,0,0.372140947668503,0.312037673114561,0,1.25578189465339,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0.159454768657487,0.163863314715738,0,0.144649058581512,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0.283880170416537,0.35613120733451,0.325773918707152,0,1.32745138339963,0.242780636154981,0.302323556964751,0.754420319023592,0,0,0.775284879504663,0.363533729477506,0,0.632073515871632,2.10837217149998,1.03135543248187,1.02131881726136,0,0.388076051348264,0.214337035031592,0.354680467284547,0.356737635204141,0.329098041204242,1.2178597964584,0.469343416127421,0.42366414172764,0,0,0,0,0,0.164140899745061,7.57850175237612,0,0.512612642393558,0,0.370389054739423,1.88368457004691,0.820165366326151,1.83022538565218,0,0.139951452323658,0,0,0,0,0.216010681643603,0,0.655087691238533,0.404593039154462,0.0826534557253359,0,1.16653475962614,0,0,0,0.165458490457098,0.388902376688095,0,0.675824501963113,0.352071715937262,0.2604087696879,1.36317147753424,0.483168241652012,0.288030006257865,0,0,0,0,0,0,0,0.147689527174577,0,0,0.100826185136841,0,0.0962118416403295,0,0.226730383615211,0,0.0897138566094757,0,0.19318959403219,0.187682475451182,0.183151624267265,0.428736758158132,0.501572104035363,0,0,0,0,0,0,0,0,0,0.51776031175182,0,0,0.170733605754134,0,0,0.367687016900028,0.666740183404846,0.206035057238894,0.320919209591815,0.252697211763798,0.50695859978048,0.565879024158229,0.0936415074698824,0.0640251524048693,0.287177344778066,0.476293691283074,0.347652977834566,0.192909220463705,0,0.735994600671987,0.342869252385415,0.177475806159338,0,0.436039249896986,0.188218760830661,0.169229215783353,0.182927972872773,0.263069711437843,0,0.561142271657738,0.237270036248348,0.197008964751127,0.409231043169689,0.309873682371932,0,0.499621155875892,0.233931608445408,0,0.191288332068843,0.661774257358546,0.231867835620421 | |||
|short_description=p4@March8 | |||
}} |
Revision as of 23:13, 4 August 2015
Short description: | p4@March8 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_March8_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 250bp_to_NM_027920, uc009dkb.1_5end |
EntrezGene: | 71779 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.49e-10 | 25 |
brush border epithelial cell | 1.71e-10 | 6 |
gut absorptive cell | 1.71e-10 | 6 |
enterocyte | 1.71e-10 | 6 |
columnar/cuboidal epithelial cell | 7.36e-09 | 7 |
endodermal cell | 3.46e-08 | 20 |
hepatocyte | 4.30e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.86e-23 | 31 |
gastrointestinal system | 2.92e-17 | 47 |
mucosa | 1.77e-15 | 15 |
digestive system | 3.81e-14 | 116 |
digestive tract | 3.81e-14 | 116 |
primitive gut | 3.81e-14 | 116 |
endoderm-derived structure | 9.89e-14 | 118 |
endoderm | 9.89e-14 | 118 |
presumptive endoderm | 9.89e-14 | 118 |
organ component layer | 2.56e-13 | 24 |
intestinal mucosa | 1.80e-12 | 13 |
wall of intestine | 1.80e-12 | 13 |
gastrointestinal system mucosa | 1.80e-12 | 13 |
subdivision of digestive tract | 2.10e-12 | 114 |
digestive tract diverticulum | 1.56e-10 | 23 |
sac | 1.56e-10 | 23 |
liver | 2.10e-09 | 22 |
epithelial sac | 2.10e-09 | 22 |
digestive gland | 2.10e-09 | 22 |
epithelium of foregut-midgut junction | 2.10e-09 | 22 |
anatomical boundary | 2.10e-09 | 22 |
hepatobiliary system | 2.10e-09 | 22 |
foregut-midgut junction | 2.10e-09 | 22 |
hepatic diverticulum | 2.10e-09 | 22 |
liver primordium | 2.10e-09 | 22 |
septum transversum | 2.10e-09 | 22 |
liver bud | 2.10e-09 | 22 |
exocrine gland | 6.40e-08 | 25 |
exocrine system | 6.40e-08 | 25 |
small intestine | 9.10e-08 | 4 |