FFCP PHASE1:Hg19::chr9:131464767..131464811,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:131464767..131464811,+
|short_description=p1@PKN3
|description=CAGE_peak_1_at_PKN3_5end
|association_with_transcript=0bp_to_ENST00000291906,NM_013355,uc004...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=29941 | |EntrezGene=29941 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17999 | |HGNC=17999 | ||
|TSSclassifier=strong | |||
|UniProt=Q6P5Z2 | |UniProt=Q6P5Z2 | ||
|association_with_transcript=0bp_to_ENST00000291906,NM_013355,uc004bvw.2,uc010myh.2_5end | |||
|cluster_id=chr9:131464767..131464811,+ | |||
|description=CAGE_peak_1_at_PKN3_5end | |||
|id=chr9:131464767..131464811,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.79e-16!254;CL:0002078!3.68e-13!44;CL:0000115!1.76e-12!35;CL:0002139!1.36e-11!24;CL:0000071!7.31e-11!18;CL:0002546!7.31e-11!18;CL:0000213!1.99e-10!57;CL:0000215!1.99e-10!57;CL:1000449!8.96e-08!16;CL:1000497!3.57e-07!18;CL:0002518!3.57e-07!18;CL:0002321!5.21e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.08e-13;24!CL:0000115;8.80e-13;36!CL:0000071;2.64e-12;18!CL:0002078;3.08e-10;45!CL:1000449;4.03e-09;15!CL:0000213;3.72e-08;58!CL:0000215;3.72e-08;58!CL:1000497;5.13e-08;17!CL:0002518;5.13e-08;17!CL:0002681;9.54e-08;12!CL:0002584;9.54e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.77e-16,253;CL:0002078,6.87e-16,45;CL:0000115,2.22e-15,36;CL:0002139,3.53e-13,24;CL:0000213,9.55e-13,58;CL:0000215,9.55e-13,58;CL:0000071,2.47e-12,18;CL:0002546,2.47e-12,18;CL:1000449,2.87e-09,15;CL:1000497,2.41e-08,17;CL:0002518,2.41e-08,17;CL:0002681,7.73e-08,12;CL:0002584,7.73e-08,12;CL:0002321,1.17e-07,250 | |||
|ontology_enrichment_development_v019=CL:0002546;2.64e-12;18 | |||
|ontology_enrichment_disease=DOID:162!5.17e-13!235;DOID:14566!5.92e-12!239;DOID:1240!4.24e-09!39;DOID:8692!3.55e-08!31;DOID:0050687!1.60e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.70e-08;31!DOID:1240;5.77e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.79e-13,235;DOID:14566,3.14e-12,239;DOID:1240,5.26e-10,39;DOID:8692,5.58e-09,31;DOID:2531,5.46e-07,51;DOID:0060083,5.46e-07,51;DOID:0050687,7.89e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001986!7.31e-11!18;UBERON:0004638!7.31e-11!18;UBERON:0004852!7.31e-11!18;UBERON:0000487!6.77e-09!22;UBERON:0006914!2.17e-08!25;UBERON:0004211!8.96e-08!16;UBERON:0001285!8.96e-08!16;UBERON:0007684!8.96e-08!16;UBERON:0003220!8.96e-08!16;UBERON:0004208!8.96e-08!16;UBERON:0005177!9.38e-08!107;UBERON:0001851!2.60e-07!16;UBERON:0002113!3.13e-07!27;UBERON:0003918!3.13e-07!27;UBERON:0005095!3.13e-07!27;UBERON:0007687!3.13e-07!27;UBERON:0005172!3.55e-07!55;UBERON:0005173!3.55e-07!55;UBERON:0006555!4.01e-07!17;UBERON:0005103!4.01e-07!17;UBERON:0000083!4.01e-07!17;UBERON:0009201!4.01e-07!17;UBERON:0004819!4.01e-07!17;UBERON:0006553!4.01e-07!17;UBERON:0003074!4.01e-07!17;UBERON:0003060!4.01e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.64e-12;18!UBERON:0001986;2.64e-12;18!UBERON:0004852;2.64e-12;18!UBERON:0000487;2.79e-10;22!UBERON:0006914;1.26e-09;25!UBERON:0006555;4.03e-09;15!UBERON:0004819;4.03e-09;15!UBERON:0001285;4.03e-09;15!UBERON:0007684;4.03e-09;15!UBERON:0002113;5.43e-09;24!UBERON:0011143;5.43e-09;24!UBERON:0001851;2.10e-08;15!UBERON:0001225;9.54e-08;12!UBERON:0008987;9.54e-08;12!UBERON:0000489;1.31e-07;29!UBERON:0000353;1.95e-07;15!UBERON:0006554;2.00e-07;30!UBERON:0001008;2.00e-07;30!UBERON:0000490;2.79e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.47e-12,18;UBERON:0001986,2.47e-12,18;UBERON:0004852,2.47e-12,18;UBERON:0000487,1.79e-10,22;UBERON:0006914,9.60e-10,25;UBERON:0004211,2.87e-09,15;UBERON:0009773,2.87e-09,15;UBERON:0001231,2.87e-09,15;UBERON:0001285,2.87e-09,15;UBERON:0007684,2.87e-09,15;UBERON:0004208,2.87e-09,15;UBERON:0001851,1.07e-08,15;UBERON:0006555,3.01e-08,16;UBERON:0004819,3.01e-08,16;UBERON:0001225,7.73e-08,12;UBERON:0008987,7.73e-08,12;UBERON:0002113,9.20e-08,26;UBERON:0003918,9.20e-08,26;UBERON:0011143,9.20e-08,26;UBERON:0005095,9.20e-08,26;UBERON:0007687,9.20e-08,26;UBERON:0000353,1.27e-07,15;UBERON:0005172,1.53e-07,54;UBERON:0005173,1.53e-07,54;UBERON:0005177,6.68e-07,101 | |||
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| ||
|short_description=p1@PKN3 | |||
}} | }} |
Latest revision as of 20:37, 15 September 2015
Short description: | p1@PKN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PKN3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000291906, NM_013355, uc004bvw.2, uc010myh.2_5end |
EntrezGene: | PKN3 |
HGNC: | 17999 |
UniProt: | Q6P5Z2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.77e-16 | 253 |
meso-epithelial cell | 6.87e-16 | 45 |
endothelial cell | 2.22e-15 | 36 |
endothelial cell of vascular tree | 3.53e-13 | 24 |
lining cell | 9.55e-13 | 58 |
barrier cell | 9.55e-13 | 58 |
blood vessel endothelial cell | 2.47e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.47e-12 | 18 |
epithelial cell of nephron | 2.87e-09 | 15 |
kidney cell | 2.41e-08 | 17 |
kidney epithelial cell | 2.41e-08 | 17 |
kidney cortical cell | 7.73e-08 | 12 |
renal cortical epithelial cell | 7.73e-08 | 12 |
embryonic cell | 1.17e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.47e-12 | 18 |
endothelium | 2.47e-12 | 18 |
cardiovascular system endothelium | 2.47e-12 | 18 |
simple squamous epithelium | 1.79e-10 | 22 |
squamous epithelium | 9.60e-10 | 25 |
nephron epithelium | 2.87e-09 | 15 |
renal tubule | 2.87e-09 | 15 |
nephron tubule | 2.87e-09 | 15 |
nephron | 2.87e-09 | 15 |
uriniferous tubule | 2.87e-09 | 15 |
nephrogenic mesenchyme | 2.87e-09 | 15 |
cortex | 1.07e-08 | 15 |
excretory tube | 3.01e-08 | 16 |
kidney epithelium | 3.01e-08 | 16 |
cortex of kidney | 7.73e-08 | 12 |
renal parenchyma | 7.73e-08 | 12 |
kidney | 9.20e-08 | 26 |
kidney mesenchyme | 9.20e-08 | 26 |
upper urinary tract | 9.20e-08 | 26 |
kidney rudiment | 9.20e-08 | 26 |
kidney field | 9.20e-08 | 26 |
parenchyma | 1.27e-07 | 15 |
abdomen element | 1.53e-07 | 54 |
abdominal segment element | 1.53e-07 | 54 |
trunk region element | 6.68e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.79e-13 | 235 |
disease of cellular proliferation | 3.14e-12 | 239 |
leukemia | 5.26e-10 | 39 |
myeloid leukemia | 5.58e-09 | 31 |
hematologic cancer | 5.46e-07 | 51 |
immune system cancer | 5.46e-07 | 51 |
cell type cancer | 7.89e-07 | 143 |