FFCP PHASE1:Hg19::chr5:149324306..149324362,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5145 | |EntrezGene=5145 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8785 | |HGNC=8785 | ||
|TSSclassifier=strong | |||
|UniProt=P16499 | |UniProt=P16499 | ||
|association_with_transcript=0bp_to_ENST00000255266,ENST00000508173,NM_000440,uc003lrg.3_5end | |association_with_transcript=0bp_to_ENST00000255266,ENST00000508173,NM_000440,uc003lrg.3_5end | ||
|cluster_id=chr5:149324306..149324362,- | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_1_at_PDE6A_5end | |description=CAGE_peak_1_at_PDE6A_5end | ||
|id=chr5:149324306..149324362,- | |id=chr5:149324306..149324362,- | ||
|ontology_enrichment_celltype=CL:0002623;8.04e-23;3!CL:0000622;4.11e-14;5!CL:0000154;6.34e-12;6!CL:0000150;2.96e-08;9!CL:0002231;9.64e-07;3 | |ontology_enrichment_celltype=CL:0002623!4.68e-19!3;CL:0000622!1.21e-11!5;CL:0000154!8.81e-10!6;CL:0002166!1.75e-08!3;CL:0002336!3.02e-07!1;CL:0002261!3.02e-07!1;CL:0002170!3.02e-07!1;CL:0002251!5.72e-07!21;CL:0002568!6.20e-07!1 | ||
| | |ontology_enrichment_celltype_v019=CL:0002623;8.04e-23;3!CL:0000622;4.11e-14;5!CL:0000154;6.34e-12;6!CL:0000150;2.96e-08;9!CL:0002231;9.64e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002623,8.04e-23,3;CL:0000622,4.11e-14,5;CL:0000154,6.34e-12,6;CL:0000150,2.96e-08,9;CL:0002231,9.12e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.88e-23;3!UBERON:0006238;5.81e-07;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002372;1.22e-17;1!UBERON:0001961;1.22e-17;1!UBERON:0001744;1.22e-17;1!UBERON:0001042;1.22e-17;1!UBERON:0001735;1.22e-17;1!UBERON:0000966;1.72e-14;5!UBERON:0005388;1.72e-14;5!UBERON:0001802;1.72e-14;5!UBERON:0001044;6.34e-12;6!UBERON:0003293;6.34e-12;6!UBERON:0003294;6.34e-12;6!UBERON:0010047;6.34e-12;6!UBERON:0003408;6.34e-12;6!UBERON:0000167;6.34e-12;6!UBERON:0000007;1.22e-09;2!UBERON:0006562;1.71e-09;2!UBERON:0000161;2.20e-08;19!UBERON:0000166;2.20e-08;19!UBERON:0000970;3.24e-08;20!UBERON:0002104;7.53e-08;21!UBERON:0001444;1.19e-07;48!UBERON:0000020;3.27e-07;23!UBERON:0000033;4.59e-07;50!UBERON:0000153;5.01e-07;54!UBERON:0001032;6.22e-07;24!UBERON:0004456;6.22e-07;24 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003296!2.60e-14!4;UBERON:0010133!2.60e-14!4;UBERON:0000007!2.71e-13!2;UBERON:0001044!8.81e-10!6;UBERON:0003293!8.81e-10!6;UBERON:0003294!8.81e-10!6;UBERON:0010047!8.81e-10!6;UBERON:0000167!8.81e-10!6;UBERON:0006947!8.03e-09!3;UBERON:0004054!8.03e-09!3;UBERON:0001894!2.22e-08!7;UBERON:0006222!2.22e-08!7;UBERON:0000153!2.68e-08!129;UBERON:0007811!2.68e-08!129;UBERON:0000078!3.35e-08!18;UBERON:0000033!1.17e-07!123;UBERON:0000161!1.49e-07!35;UBERON:0002372!1.97e-07!1;UBERON:0001961!1.97e-07!1;UBERON:0001744!1.97e-07!1;UBERON:0001735!1.97e-07!1;UBERON:0001000!2.84e-07!1;UBERON:0005352!2.84e-07!1;UBERON:0000165!3.37e-07!28;UBERON:0000930!3.37e-07!28;UBERON:0001301!3.41e-07!1;UBERON:0007023!3.65e-07!115;UBERON:0000481!5.19e-07!347;UBERON:0000166!5.43e-07!21;UBERON:0001444!6.22e-07!48;UBERON:0001882!7.40e-07!1;UBERON:0005403!7.40e-07!1;UBERON:0005904!8.10e-07!4;UBERON:0002530!8.25e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;1.22e-17;1!UBERON:0001961;1.22e-17;1!UBERON:0001744;1.22e-17;1!UBERON:0001042;1.22e-17;1!UBERON:0001735;1.22e-17;1!UBERON:0000966;1.72e-14;5!UBERON:0005388;1.72e-14;5!UBERON:0001802;1.72e-14;5!UBERON:0001044;6.34e-12;6!UBERON:0003293;6.34e-12;6!UBERON:0003294;6.34e-12;6!UBERON:0010047;6.34e-12;6!UBERON:0003408;6.34e-12;6!UBERON:0000167;6.34e-12;6!UBERON:0000007;1.22e-09;2!UBERON:0006562;1.71e-09;2!UBERON:0000161;2.20e-08;19!UBERON:0000166;2.20e-08;19!UBERON:0000970;3.24e-08;20!UBERON:0002104;7.53e-08;21!UBERON:0001444;1.19e-07;48!UBERON:0000020;3.27e-07;23!UBERON:0000033;4.59e-07;50!UBERON:0000153;5.01e-07;54!UBERON:0001032;6.22e-07;24!UBERON:0004456;6.22e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,1.70e-17,1;UBERON:0001961,1.70e-17,1;UBERON:0001744,1.70e-17,1;UBERON:0001735,1.70e-17,1;UBERON:0000966,3.08e-12,6;UBERON:0005388,3.08e-12,6;UBERON:0001802,3.08e-12,6;UBERON:0001044,6.34e-12,6;UBERON:0003293,6.34e-12,6;UBERON:0003294,6.34e-12,6;UBERON:0010047,6.34e-12,6;UBERON:0000167,6.34e-12,6;UBERON:0000007,1.22e-09,2;UBERON:0001444,1.70e-08,49;UBERON:0000970,7.53e-08,21;UBERON:0002104,7.53e-08,21;UBERON:0000161,1.40e-07,36;UBERON:0003408,1.62e-07,10;UBERON:0000033,1.97e-07,56;UBERON:0000166,2.69e-07,22;UBERON:0000020,6.22e-07,24;UBERON:0001032,6.22e-07,24;UBERON:0004456,6.22e-07,24 | |||
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|short_description=p1@PDE6A | |short_description=p1@PDE6A | ||
}} | }} |
Latest revision as of 02:28, 16 September 2015
Short description: | p1@PDE6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDE6A_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000255266, ENST00000508173, NM_000440, uc003lrg.3_5end |
EntrezGene: | PDE6A |
HGNC: | 8785 |
UniProt: | P16499 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 8.04e-23 | 3 |
acinar cell | 4.11e-14 | 5 |
protein secreting cell | 6.34e-12 | 6 |
glandular epithelial cell | 2.96e-08 | 9 |
epithelial cell of prostate | 9.12e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
tonsil | 1.70e-17 | 1 |
mucosa-associated lymphoid tissue | 1.70e-17 | 1 |
lymphoid tissue | 1.70e-17 | 1 |
tonsillar ring | 1.70e-17 | 1 |
retina | 3.08e-12 | 6 |
photoreceptor array | 3.08e-12 | 6 |
posterior segment of eyeball | 3.08e-12 | 6 |
saliva-secreting gland | 6.34e-12 | 6 |
gland of oral region | 6.34e-12 | 6 |
gland of foregut | 6.34e-12 | 6 |
oral gland | 6.34e-12 | 6 |
oral cavity | 6.34e-12 | 6 |
pituitary gland | 1.22e-09 | 2 |
subdivision of head | 1.70e-08 | 49 |
eye | 7.53e-08 | 21 |
visual system | 7.53e-08 | 21 |
orifice | 1.40e-07 | 36 |
gland of gut | 1.62e-07 | 10 |
head | 1.97e-07 | 56 |
oral opening | 2.69e-07 | 22 |
sense organ | 6.22e-07 | 24 |
sensory system | 6.22e-07 | 24 |
entire sense organ system | 6.22e-07 | 24 |