FFCP PHASE1:Hg19::chr5:149516966..149516977,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5159 | |EntrezGene=5159 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8804 | |HGNC=8804 | ||
|TSSclassifier=strong | |||
|UniProt=E5RII0 | |UniProt=E5RII0 | ||
|association_with_transcript=22bp_to_ENST00000517957_5end | |association_with_transcript=22bp_to_ENST00000517957_5end | ||
|cluster_id=chr5:149516966..149516977,- | |||
|coexpression_cluster_id=C576 | |coexpression_cluster_id=C576 | ||
|description=CAGE_peak_8_at_PDGFRB_5end | |description=CAGE_peak_8_at_PDGFRB_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000669!2.33e-08!5;CL:0000064!2.22e-07!3;CL:0005012!2.22e-07!3;CL:0000067!2.22e-07!3;CL:0002304!2.22e-07!3 | |ontology_enrichment_celltype=CL:0000669!2.33e-08!5;CL:0000064!2.22e-07!3;CL:0005012!2.22e-07!3;CL:0000067!2.22e-07!3;CL:0002304!2.22e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.03e-14;12!CL:0000222;9.10e-12;1!CL:0002563;1.32e-11;4 | |ontology_enrichment_celltype_v019=CL:0000182;2.03e-14;12!CL:0000222;9.10e-12;1!CL:0002563;1.32e-11;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.73e-14,12;CL:0002563,9.63e-12,4;CL:0000223,2.19e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.07e-23;11!UBERON:0009497;4.70e-20;13!UBERON:0003104;8.07e-12;31!UBERON:0001041;1.20e-08;30 | |ontology_enrichment_development_v019=UBERON:0004161;1.07e-23;11!UBERON:0009497;4.70e-20;13!UBERON:0003104;8.07e-12;31!UBERON:0001041;1.20e-08;30 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002107;1.37e-19;19!UBERON:0006925;1.37e-19;19!UBERON:0002423;8.26e-15;25!UBERON:0001242;1.32e-11;4!UBERON:0001262;1.32e-11;4!UBERON:0004786;1.32e-11;4!UBERON:0004808;1.32e-11;4!UBERON:0001277;1.32e-11;4!UBERON:0002365;3.25e-11;31!UBERON:0002330;3.25e-11;31!UBERON:0002368;7.39e-10;33!UBERON:0005284;2.79e-09;5!UBERON:0005172;9.90e-09;52!UBERON:0005173;9.90e-09;52!UBERON:0000949;2.10e-07;43!UBERON:0000485;5.34e-07;7!UBERON:0003929;5.34e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0002107;1.37e-19;19!UBERON:0006925;1.37e-19;19!UBERON:0002423;8.26e-15;25!UBERON:0001242;1.32e-11;4!UBERON:0001262;1.32e-11;4!UBERON:0004786;1.32e-11;4!UBERON:0004808;1.32e-11;4!UBERON:0001277;1.32e-11;4!UBERON:0002365;3.25e-11;31!UBERON:0002330;3.25e-11;31!UBERON:0002368;7.39e-10;33!UBERON:0005284;2.79e-09;5!UBERON:0005172;9.90e-09;52!UBERON:0005173;9.90e-09;52!UBERON:0000949;2.10e-07;43!UBERON:0000485;5.34e-07;7!UBERON:0003929;5.34e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.07e-19,19;UBERON:0006925,1.07e-19,19;UBERON:0008836,1.07e-19,19;UBERON:0008835,5.75e-17,22;UBERON:0003894,5.75e-17,22;UBERON:0009854,3.25e-16,23;UBERON:0007499,6.88e-15,25;UBERON:0009497,6.88e-15,25;UBERON:0000015,6.88e-15,25;UBERON:0002423,6.88e-15,25;UBERON:0006235,6.88e-15,25;UBERON:0004161,6.88e-15,25;UBERON:0003929,8.00e-15,54;UBERON:0009856,2.66e-14,26;UBERON:0002365,6.19e-12,31;UBERON:0002330,6.19e-12,31;UBERON:0001242,9.63e-12,4;UBERON:0001262,9.63e-12,4;UBERON:0004786,9.63e-12,4;UBERON:0004808,9.63e-12,4;UBERON:0001277,9.63e-12,4;UBERON:0005172,1.32e-11,54;UBERON:0005173,1.32e-11,54;UBERON:0002368,1.59e-10,35;UBERON:0002417,2.37e-10,60;UBERON:0000916,2.37e-10,60;UBERON:0005911,2.32e-09,82;UBERON:0005284,4.06e-09,5;UBERON:0002530,3.64e-08,59;UBERON:0000949,4.31e-08,45;UBERON:0003104,9.96e-08,160;UBERON:0009142,9.96e-08,160 | |||
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|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0.246242116153576,0,0,0,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0,0,0,0.189069634328136,0.221729397462564,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,1.21085942115945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0.103052529238439,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,10.8110993834539,0.590789906681404,0,3.07471096357784,0,0,0,0,0,0,0,0,0,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,0,0.5867062865676,0.258543431515556,0,0,0.531876233169741,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,1.67737398844108,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0.234282829985426,0,0,0,0,0,0,0.979005787313703,0.686286847621712,0,0,0,0,0,0,0,0.306923946576125,0,0.384417447767103,0,0.321707842287215,0,0,0,0,0,0,3.14234568938218,0,0,0,0,0,0,0,1.56869953835371,0,0,0,0,0.215915916102139,1.54227252690289,0.812839312631559,0.501689773854853,0,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,1.116475108079,0,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,2.91845782408015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,1.69623685720729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,1.6544468284517,1.483485450861,2.2243169471881,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,1.61207457045891,1.32506888912221,0.129282956361551,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0.521745061811734,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0.260994291965212,0,0.231522474323834,0,0,0,0,0,0,0,0,1.0362910251936,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0.79832133146375,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0.187967835959707,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26698501011437,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@PDGFRB | |short_description=p8@PDGFRB | ||
}} | }} |
Latest revision as of 03:01, 16 September 2015
Short description: | p8@PDGFRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PDGFRB_5end |
Coexpression cluster: | C576_Hepatocyte_hepatocellular_liver_Intestinal_mature_breast_Prostate |
Association with transcript: | 22bp_to_ENST00000517957_5end |
EntrezGene: | PDGFRB |
HGNC: | 8804 |
UniProt: | E5RII0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.73e-14 | 12 |
intestinal epithelial cell | 9.63e-12 | 4 |
endodermal cell | 2.19e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 1.07e-19 | 19 |
digestive gland | 1.07e-19 | 19 |
liver bud | 1.07e-19 | 19 |
hepatic diverticulum | 5.75e-17 | 22 |
liver primordium | 5.75e-17 | 22 |
digestive tract diverticulum | 3.25e-16 | 23 |
epithelial sac | 6.88e-15 | 25 |
epithelium of foregut-midgut junction | 6.88e-15 | 25 |
anatomical boundary | 6.88e-15 | 25 |
hepatobiliary system | 6.88e-15 | 25 |
foregut-midgut junction | 6.88e-15 | 25 |
septum transversum | 6.88e-15 | 25 |
gut epithelium | 8.00e-15 | 54 |
sac | 2.66e-14 | 26 |
exocrine gland | 6.19e-12 | 31 |
exocrine system | 6.19e-12 | 31 |
intestinal mucosa | 9.63e-12 | 4 |
wall of intestine | 9.63e-12 | 4 |
gastrointestinal system mucosa | 9.63e-12 | 4 |
gastrointestinal system epithelium | 9.63e-12 | 4 |
intestinal epithelium | 9.63e-12 | 4 |
abdomen element | 1.32e-11 | 54 |
abdominal segment element | 1.32e-11 | 54 |
endocrine gland | 1.59e-10 | 35 |
abdominal segment of trunk | 2.37e-10 | 60 |
abdomen | 2.37e-10 | 60 |
endo-epithelium | 2.32e-09 | 82 |
brain vasculature | 4.06e-09 | 5 |
gland | 3.64e-08 | 59 |
endocrine system | 4.31e-08 | 45 |
mesenchyme | 9.96e-08 | 160 |
entire embryonic mesenchyme | 9.96e-08 | 160 |