FFCP PHASE1:Hg19::chr12:96794291..96794324,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:96794291..96794324,-
|short_description=p3@CDK17
|description=CAGE_peak_3_at_CDK17_5end
|association_with_transcript=13bp_to_ENST00000261211_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5128 | |EntrezGene=5128 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8750 | |HGNC=8750 | ||
|TSSclassifier=strong | |||
|UniProt=Q00537 | |UniProt=Q00537 | ||
|association_with_transcript=13bp_to_ENST00000261211_5end | |||
|cluster_id=chr12:96794291..96794324,- | |||
|description=CAGE_peak_3_at_CDK17_5end | |||
|id=chr12:96794291..96794324,- | |||
|ontology_enrichment_celltype=CL:0002139!1.20e-10!24;CL:0002057!1.28e-09!42;CL:0000115!1.34e-09!35;CL:0000071!1.11e-08!18;CL:0002546!1.11e-08!18;CL:0000766!5.32e-08!76;CL:0000860!7.12e-08!45;CL:0000359!1.18e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.02e-10;24!CL:0000860;5.71e-10;33!CL:0002057;5.71e-10;33!CL:0000115;5.83e-09;36!CL:0000071;6.02e-09;18!CL:0000359;4.64e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.16e-10,24;CL:0000115,4.96e-10,36;CL:0000860,1.24e-09,42;CL:0002057,1.24e-09,42;CL:0000766,2.38e-09,72;CL:0000071,1.08e-08,18;CL:0002546,1.08e-08,18;CL:0000359,1.15e-07,32;CL:0000839,2.10e-07,66;CL:0000738,4.21e-07,136;CL:0000473,6.41e-07,48;CL:0000234,6.41e-07,48;CL:0000557,7.40e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002546;6.02e-09;18!CL:0002057;7.72e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!6.78e-17!69;UBERON:0001981!2.83e-15!60;UBERON:0007500!2.83e-15!60;UBERON:0004537!2.83e-15!60;UBERON:0006965!2.83e-15!60;UBERON:0002049!3.48e-15!79;UBERON:0007798!3.48e-15!79;UBERON:0004535!5.72e-15!110;UBERON:0001009!1.69e-13!113;UBERON:0004872!7.85e-13!84;UBERON:0003081!3.83e-12!216;UBERON:0001637!6.25e-12!42;UBERON:0003509!6.25e-12!42;UBERON:0004572!6.25e-12!42;UBERON:0004573!7.97e-10!33;UBERON:0004571!7.97e-10!33;UBERON:0007023!3.57e-09!115;UBERON:0002193!4.23e-09!112;UBERON:0001986!1.11e-08!18;UBERON:0004638!1.11e-08!18;UBERON:0004852!1.11e-08!18;UBERON:0002390!1.77e-07!102;UBERON:0003061!1.77e-07!102;UBERON:0004111!2.24e-07!241;UBERON:0000025!2.36e-07!194;UBERON:0000480!4.68e-07!626;UBERON:0000467!7.02e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.71e-10;33!UBERON:0004571;4.71e-10;33!UBERON:0001637;2.32e-09;42!UBERON:0003509;2.32e-09;42!UBERON:0004572;2.32e-09;42!UBERON:0000055;3.81e-09;65!UBERON:0004638;6.02e-09;18!UBERON:0001986;6.02e-09;18!UBERON:0004852;6.02e-09;18!UBERON:0007500;7.55e-09;56!UBERON:0001981;7.55e-09;56!UBERON:0004537;7.55e-09;56!UBERON:0002049;8.69e-07;75!UBERON:0007798;8.69e-07;75!UBERON:0000487;9.04e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,5.34e-17,68;UBERON:0003081,1.97e-15,203;UBERON:0007500,2.62e-15,59;UBERON:0001981,2.62e-15,59;UBERON:0004537,2.62e-15,59;UBERON:0006965,2.62e-15,59;UBERON:0002049,2.98e-15,78;UBERON:0007798,2.98e-15,78;UBERON:0004535,4.12e-15,109;UBERON:0001009,1.49e-13,112;UBERON:0004872,6.28e-13,83;UBERON:0001637,5.99e-12,42;UBERON:0003509,5.99e-12,42;UBERON:0004572,5.99e-12,42;UBERON:0002193,2.68e-10,108;UBERON:0000926,6.36e-10,315;UBERON:0004120,6.36e-10,315;UBERON:0006603,6.36e-10,315;UBERON:0004573,7.70e-10,33;UBERON:0004571,7.70e-10,33;UBERON:0007023,4.79e-09,114;UBERON:0002405,7.67e-09,93;UBERON:0004638,1.08e-08,18;UBERON:0001986,1.08e-08,18;UBERON:0004852,1.08e-08,18;UBERON:0002390,1.53e-08,98;UBERON:0003061,1.53e-08,98;UBERON:0000025,2.94e-07,192;UBERON:0004111,4.46e-07,240;UBERON:0002204,5.36e-07,167 | |||
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| ||
|short_description=p3@CDK17 | |||
}} | }} |
Latest revision as of 04:16, 16 September 2015
Short description: | p3@CDK17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDK17_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_ENST00000261211_5end |
EntrezGene: | CDK17 |
HGNC: | 8750 |
UniProt: | Q00537 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.16e-10 | 24 |
endothelial cell | 4.96e-10 | 36 |
classical monocyte | 1.24e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.24e-09 | 42 |
myeloid leukocyte | 2.38e-09 | 72 |
blood vessel endothelial cell | 1.08e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.08e-08 | 18 |
vascular associated smooth muscle cell | 1.15e-07 | 32 |
myeloid lineage restricted progenitor cell | 2.10e-07 | 66 |
leukocyte | 4.21e-07 | 136 |
defensive cell | 6.41e-07 | 48 |
phagocyte | 6.41e-07 | 48 |
granulocyte monocyte progenitor cell | 7.40e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
vessel | 5.34e-17 | 68 |
lateral plate mesoderm | 1.97e-15 | 203 |
epithelial tube open at both ends | 2.62e-15 | 59 |
blood vessel | 2.62e-15 | 59 |
blood vasculature | 2.62e-15 | 59 |
vascular cord | 2.62e-15 | 59 |
vasculature | 2.98e-15 | 78 |
vascular system | 2.98e-15 | 78 |
cardiovascular system | 4.12e-15 | 109 |
circulatory system | 1.49e-13 | 112 |
splanchnic layer of lateral plate mesoderm | 6.28e-13 | 83 |
artery | 5.99e-12 | 42 |
arterial blood vessel | 5.99e-12 | 42 |
arterial system | 5.99e-12 | 42 |
hemolymphoid system | 2.68e-10 | 108 |
mesoderm | 6.36e-10 | 315 |
mesoderm-derived structure | 6.36e-10 | 315 |
presumptive mesoderm | 6.36e-10 | 315 |
systemic artery | 7.70e-10 | 33 |
systemic arterial system | 7.70e-10 | 33 |
adult organism | 4.79e-09 | 114 |
immune system | 7.67e-09 | 93 |
blood vessel endothelium | 1.08e-08 | 18 |
endothelium | 1.08e-08 | 18 |
cardiovascular system endothelium | 1.08e-08 | 18 |
hematopoietic system | 1.53e-08 | 98 |
blood island | 1.53e-08 | 98 |
tube | 2.94e-07 | 192 |
anatomical conduit | 4.46e-07 | 240 |
musculoskeletal system | 5.36e-07 | 167 |