FFCP PHASE1:Hg19::chr6:152639541..152639577,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23345 | |EntrezGene=23345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |HGNC=17089 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-62bp_to_ENST00000356820,ENST00000367256,uc003qos.3,uc010kiv.2_5end | |association_with_transcript=-62bp_to_ENST00000356820,ENST00000367256,uc003qos.3,uc010kiv.2_5end | ||
|cluster_id=chr6:152639541..152639577,- | |||
|description=CAGE_peak_16_at_SYNE1_5end | |description=CAGE_peak_16_at_SYNE1_5end | ||
|id=chr6:152639541..152639577,- | |id=chr6:152639541..152639577,- | ||
|ontology_enrichment_celltype=CL:0002139!3.60e-13!24;CL:0000213!6.68e-10!57;CL:0000215!6.68e-10!57;CL:0000071!1.99e-08!18;CL:0002546!1.99e-08!18;CL:0000222!1.17e-07!119;CL:0000115!1.87e-07!35;CL:0005020!9.84e-07!6;CL:0002138!9.84e-07!6;CL:0005022!9.84e-07!6 | |ontology_enrichment_celltype=CL:0002139!3.60e-13!24;CL:0000213!6.68e-10!57;CL:0000215!6.68e-10!57;CL:0000071!1.99e-08!18;CL:0002546!1.99e-08!18;CL:0000222!1.17e-07!119;CL:0000115!1.87e-07!35;CL:0005020!9.84e-07!6;CL:0002138!9.84e-07!6;CL:0005022!9.84e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002138;9.09e-13;6!CL:0002139;4.25e-11;24!CL:0000077;5.96e-11;19!CL:0000213;1.83e-09;58!CL:0000215;1.83e-09;58 | |ontology_enrichment_celltype_v019=CL:0002138;9.09e-13;6!CL:0002139;4.25e-11;24!CL:0000077;5.96e-11;19!CL:0000213;1.83e-09;58!CL:0000215;1.83e-09;58 | ||
|ontology_enrichment_celltype_v019_2=CL:0000213,2.23e-14,58;CL:0000215,2.23e-14,58;CL:0005020,6.86e-13,6;CL:0002138,6.86e-13,6;CL:0005022,6.86e-13,6;CL:0002139,3.81e-11,24;CL:0000077,8.06e-11,19;CL:0000222,5.20e-07,121;CL:0000115,5.31e-07,36 | |||
|ontology_enrichment_development_v019=CL:0005022;9.09e-13;6!UBERON:0005062;3.06e-11;4!UBERON:0007284;3.06e-11;4!UBERON:0004872;8.86e-07;7 | |ontology_enrichment_development_v019=CL:0005022;9.09e-13;6!UBERON:0005062;3.06e-11;4!UBERON:0007284;3.06e-11;4!UBERON:0004872;8.86e-07;7 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!4.39e-15!84;UBERON:0001009!1.68e-13!113;UBERON:0000055!2.11e-13!69;UBERON:0002049!7.98e-13!79;UBERON:0007798!7.98e-13!79;UBERON:0004535!1.26e-11!110;UBERON:0001981!9.58e-11!60;UBERON:0007500!9.58e-11!60;UBERON:0004537!9.58e-11!60;UBERON:0006965!9.58e-11!60;UBERON:0001986!1.99e-08!18;UBERON:0004638!1.99e-08!18;UBERON:0004852!1.99e-08!18;UBERON:0007100!5.99e-08!27;UBERON:0000487!1.04e-07!22;UBERON:0006914!1.69e-07!25;UBERON:0003914!4.76e-07!118;UBERON:0007023!8.48e-07!115 | |ontology_enrichment_uberon=UBERON:0004872!4.39e-15!84;UBERON:0001009!1.68e-13!113;UBERON:0000055!2.11e-13!69;UBERON:0002049!7.98e-13!79;UBERON:0007798!7.98e-13!79;UBERON:0004535!1.26e-11!110;UBERON:0001981!9.58e-11!60;UBERON:0007500!9.58e-11!60;UBERON:0004537!9.58e-11!60;UBERON:0006965!9.58e-11!60;UBERON:0001986!1.99e-08!18;UBERON:0004638!1.99e-08!18;UBERON:0004852!1.99e-08!18;UBERON:0007100!5.99e-08!27;UBERON:0000487!1.04e-07!22;UBERON:0006914!1.69e-07!25;UBERON:0003914!4.76e-07!118;UBERON:0007023!8.48e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0003978;7.83e-15;3!UBERON:0000946;7.83e-15;3!UBERON:0002133;7.86e-11;2!UBERON:0001473;1.37e-09;8!UBERON:0004536;1.37e-09;8!UBERON:0006558;1.37e-09;8!UBERON:0002465;1.12e-07;10!UBERON:0002106;1.50e-07;3!UBERON:0004151;3.92e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0003978;7.83e-15;3!UBERON:0000946;7.83e-15;3!UBERON:0002133;7.86e-11;2!UBERON:0001473;1.37e-09;8!UBERON:0004536;1.37e-09;8!UBERON:0006558;1.37e-09;8!UBERON:0002465;1.12e-07;10!UBERON:0002106;1.50e-07;3!UBERON:0004151;3.92e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003978,4.96e-15,3;UBERON:0009751,4.96e-15,3;UBERON:0000946,4.96e-15,3;UBERON:0002523,4.96e-15,3;UBERON:0005983,4.96e-15,3;UBERON:0002165,4.96e-15,3;UBERON:0002062,4.96e-15,3;UBERON:0007280,4.96e-15,3;UBERON:0002133,7.90e-11,2;UBERON:0001473,1.11e-09,8;UBERON:0004536,1.11e-09,8;UBERON:0006558,1.11e-09,8;UBERON:0002465,9.52e-08,10;UBERON:0002106,1.51e-07,3;UBERON:0004854,1.51e-07,3;UBERON:0009034,1.51e-07,3;UBERON:0002095,1.51e-07,3;UBERON:0004782,1.51e-07,3;UBERON:0003281,1.51e-07,3;UBERON:0009664,1.51e-07,3;UBERON:0002296,1.51e-07,3;UBERON:0005602,1.51e-07,3;UBERON:0001179,1.51e-07,3;UBERON:0006293,1.51e-07,3;UBERON:0004151,2.56e-07,3;UBERON:0000055,2.67e-07,68 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0.632924774881769,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,2.18638648103376,1.72046919021225,0,0,0,1.10047216776027,0.417989933073621,3.87625138753993,6.75955899104749,2.00832367658802,3.22263453687318,0.760272105718513,0.976248230192678,0.735326160691737,0.81014194788176,0.0892997282840798,0.22452937262617,0,0,0,0.183201743930407,0,0,0,0.993943903390637,0,0.926864265692532,0,0,0,0,0,0.311211035399766,0.269421344139376,0.326923806226917,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0.323292113637624,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,1.87676382089396,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2933531432838,0.646358578788889,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0,0,0,3.91871190177462,0,3.19913571782583,0,0,0,0.239624855491583,0,0,1.73737568001095,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0.280660094433074,1.02511319404561,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510281115829547,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0.495854746082934,0.192190067365106,1.27612712494584,0.10115778085555,0,0.62962469366128,0,0.616067160352178,0.532306030317022,0,0.55597265731176,0.286249773483982,0,0.316379424718726,0.190630193923825,0,0,0,0,0,0,0,0.404364963146632,0,0,0,0.243713489631284,1.05650146756755,0,0,0,0,0,0.876901770507525,0,0,0,0,0,0,0.0982490410131212,0,0,0.422215270595328,0,0,0,0.192444225451024,0,1.08890984861323,0.941438007767792,0.43050537267123,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22317994398167,0,0,0,0.23874448473769,0,0,0,0,2.56010021552684,0,0,0.398495976502139,0,0,0,0,0.311039587661807,0,0,0,1.08507746200627,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619202951523374,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38674673013139,0,0,0,0.17472666824203,0,0,0,0,1.74580229679155,0,0,0.548167698587004,0.397429223405979,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0.273810757783986,0,0,0,4.18923601908381,1.83328339209347,8.61447629492177,0.599037001496973,0.858452096273142,1.33902874465124,2.68733889946905,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,1.98627591109629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06787412567695,1.10043013569766,0.828478110694391,0,0,0,0,0.544017803369474,0.7520696820681,1.22538230705385,0.655745261419609,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,1.10961172300523,0,0,0,0,0.151230923763239,0.310874401165561,0.443565449968902,0.477890301491107,0,0,0,0.53168342911599,0,0,1.90402606084398,1.22061219961398,0,0.644463342254931,1.39210127963548,0,0,0,0,0,0,1.07220795687463,1.04397716786085,0,0,0,0,0.308801447160972,0,2.12026975135057,2.50788249752189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0.300841313397029,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.142953088353313,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0.340853619036631,0,0,0,0,0,0,0,0,1.7452677165562,0,0,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,1.22574160876953,0,0,0,0.4226557275834,0.509781344063451,10.902134485663,11.9891671630854,0,0,0.352894871715692,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,1.27940389140589,0,0,0.248298857183432,0,0.12729431655633,0.606351566874658,1.95945073107265,0.342233301085281,0.0673520530145875,0.932388670104793,0.332660356546013,0,0,0,0,0,0.244482888365733,0,0.665756774185513,0.402547587182052,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0.632924774881769,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,2.18638648103376,1.72046919021225,0,0,0,1.10047216776027,0.417989933073621,3.87625138753993,6.75955899104749,2.00832367658802,3.22263453687318,0.760272105718513,0.976248230192678,0.735326160691737,0.81014194788176,0.0892997282840798,0.22452937262617,0,0,0,0.183201743930407,0,0,0,0.993943903390637,0,0.926864265692532,0,0,0,0,0,0.311211035399766,0.269421344139376,0.326923806226917,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0.323292113637624,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,1.87676382089396,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2933531432838,0.646358578788889,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0,0,0,3.91871190177462,0,3.19913571782583,0,0,0,0.239624855491583,0,0,1.73737568001095,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0.280660094433074,1.02511319404561,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510281115829547,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0.495854746082934,0.192190067365106,1.27612712494584,0.10115778085555,0,0.62962469366128,0,0.616067160352178,0.532306030317022,0,0.55597265731176,0.286249773483982,0,0.316379424718726,0.190630193923825,0,0,0,0,0,0,0,0.404364963146632,0,0,0,0.243713489631284,1.05650146756755,0,0,0,0,0,0.876901770507525,0,0,0,0,0,0,0.0982490410131212,0,0,0.422215270595328,0,0,0,0.192444225451024,0,1.08890984861323,0.941438007767792,0.43050537267123,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22317994398167,0,0,0,0.23874448473769,0,0,0,0,2.56010021552684,0,0,0.398495976502139,0,0,0,0,0.311039587661807,0,0,0,1.08507746200627,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619202951523374,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38674673013139,0,0,0,0.17472666824203,0,0,0,0,1.74580229679155,0,0,0.548167698587004,0.397429223405979,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0.273810757783986,0,0,0,4.18923601908381,1.83328339209347,8.61447629492177,0.599037001496973,0.858452096273142,1.33902874465124,2.68733889946905,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,1.98627591109629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06787412567695,1.10043013569766,0.828478110694391,0,0,0,0,0.544017803369474,0.7520696820681,1.22538230705385,0.655745261419609,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,1.10961172300523,0,0,0,0,0.151230923763239,0.310874401165561,0.443565449968902,0.477890301491107,0,0,0,0.53168342911599,0,0,1.90402606084398,1.22061219961398,0,0.644463342254931,1.39210127963548,0,0,0,0,0,0,1.07220795687463,1.04397716786085,0,0,0,0,0.308801447160972,0,2.12026975135057,2.50788249752189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0.300841313397029,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.142953088353313,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0.340853619036631,0,0,0,0,0,0,0,0,1.7452677165562,0,0,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,1.22574160876953,0,0,0,0.4226557275834,0.509781344063451,10.902134485663,11.9891671630854,0,0,0.352894871715692,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,1.27940389140589,0,0,0.248298857183432,0,0.12729431655633,0.606351566874658,1.95945073107265,0.342233301085281,0.0673520530145875,0.932388670104793,0.332660356546013,0,0,0,0,0,0.244482888365733,0,0.665756774185513,0.402547587182052,0 | ||
|short_description=p16@SYNE1 | |short_description=p16@SYNE1 | ||
}} | }} |
Latest revision as of 06:40, 16 September 2015
Short description: | p16@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_SYNE1_5end |
Coexpression cluster: | NA |
Association with transcript: | -62bp_to_ENST00000356820, ENST00000367256, uc003qos.3, uc010kiv.2_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 2.23e-14 | 58 |
barrier cell | 2.23e-14 | 58 |
lymphangioblast | 6.86e-13 | 6 |
endothelial cell of lymphatic vessel | 6.86e-13 | 6 |
vascular lymphangioblast | 6.86e-13 | 6 |
endothelial cell of vascular tree | 3.81e-11 | 24 |
mesothelial cell | 8.06e-11 | 19 |
mesodermal cell | 5.20e-07 | 121 |
endothelial cell | 5.31e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
valve | 4.96e-15 | 3 |
cardiac mesenchyme | 4.96e-15 | 3 |
cardial valve | 4.96e-15 | 3 |
tunica intima | 4.96e-15 | 3 |
heart layer | 4.96e-15 | 3 |
endocardium | 4.96e-15 | 3 |
endocardial cushion | 4.96e-15 | 3 |
presumptive endocardium | 4.96e-15 | 3 |
atrioventricular valve | 7.90e-11 | 2 |
lymphatic vessel | 1.11e-09 | 8 |
lymph vasculature | 1.11e-09 | 8 |
lymphatic part of lymphoid system | 1.11e-09 | 8 |
lymphoid system | 9.52e-08 | 10 |
spleen | 1.51e-07 | 3 |
gastrointestinal system mesentery | 1.51e-07 | 3 |
stomach region | 1.51e-07 | 3 |
mesentery | 1.51e-07 | 3 |
gastrointestinal system serosa | 1.51e-07 | 3 |
mesentery of stomach | 1.51e-07 | 3 |
gut mesentery | 1.51e-07 | 3 |
dorsal mesentery | 1.51e-07 | 3 |
dorsal mesogastrium | 1.51e-07 | 3 |
peritoneal cavity | 1.51e-07 | 3 |
spleen primordium | 1.51e-07 | 3 |
cardiac chamber | 2.56e-07 | 3 |
vessel | 2.67e-07 | 68 |