FFCP PHASE1:Hg19::chr1:115300592..115300620,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7812 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29905 | |||
|TSSclassifier=strong | |||
|UniProt=E9PNG3 | |||
|association_with_transcript=0bp_to_ENST00000261443,ENST00000339438,ENST00000524652,ENST00000525970,ENST00000529046,ENST00000533818,ENST00000534699_5end | |||
|cluster_id=chr1:115300592..115300620,- | |||
|description=CAGE_peak_1_at_CSDE1_5end | |||
|id=chr1:115300592..115300620,- | |||
|ontology_enrichment_celltype=CL:0000766!7.54e-11!76;CL:0000763!1.22e-10!112;CL:0000049!1.22e-10!112;CL:0000860!2.05e-10!45;CL:0002057!3.43e-10!42;CL:0000839!9.75e-10!70;CL:0002320!4.04e-09!365;CL:0000134!5.91e-09!358;CL:0002194!1.91e-08!63;CL:0000576!1.91e-08!63;CL:0000040!1.91e-08!63;CL:0000559!1.91e-08!63;CL:0000557!1.96e-08!71;CL:0002009!3.35e-08!65;CL:0000738!3.14e-07!140;CL:0002032!4.52e-07!165;CL:0000837!4.52e-07!165;CL:0000037!4.57e-07!172;CL:0000566!4.57e-07!172;CL:0000219!5.32e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.56e-10;33!CL:0002057;4.56e-10;33!CL:0000473;5.55e-07;39!CL:0000234;5.55e-07;39!CL:0000576;6.11e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.82e-11,72;CL:0000763,1.72e-10,108;CL:0000049,1.72e-10,108;CL:0000860,3.43e-10,42;CL:0002057,3.43e-10,42;CL:0000839,1.15e-09,66;CL:0002320,4.23e-09,361;CL:0000134,6.16e-09,354;CL:0000473,1.60e-08,48;CL:0000234,1.60e-08,48;CL:0002194,2.28e-08,59;CL:0000576,2.28e-08,59;CL:0000040,2.28e-08,59;CL:0000559,2.28e-08,59;CL:0000557,2.47e-08,67;CL:0002009,4.11e-08,61;CL:0000738,4.71e-07,136;CL:0000219,5.66e-07,386;CL:0002032,6.84e-07,161;CL:0000837,6.84e-07,161;CL:0000037,6.95e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;9.46e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!2.52e-08!375;UBERON:0002390!7.39e-07!102;UBERON:0003061!7.39e-07!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.65e-08,371;UBERON:0004765,4.82e-07,90 | |||
|phase1_expression=442.750210282347,421.778032065237,581.295962491785,428.313716951398,505.512997797262,414.360798947675,298.893856238606,396.72008051205,324.392550224199,80.1092632994919,48.8460817580699,113.371072135559,99.7039177703554,514.620495607874,367.851087057986,489.452706616892,431.529282065167,439.646674413199,385.954843843291,126.322205586784,81.8042771889454,60.1833065237929,296.540482667775,303.313725961511,249.202139595684,389.937609531795,361.653096527011,365.139314514158,233.658380448249,407.242991381143,373.726121685007,149.865659590065,95.7834821714835,223.701176150907,292.283747789478,326.704896256095,265.414797158702,411.618588539185,564.733164075919,374.777773726276,303.629383069337,330.371539339359,319.393703866391,412.640201656405,451.561752708127,324.092305746922,456.025770408953,444.061319063572,479.735168516515,434.415512406447,395.768291587461,463.03220612185,493.675814814838,553.825858514923,598.585070746991,533.102305584657,549.632986216501,417.985681067857,501.97758348828,452.830857204368,477.584832971884,403.078288828167,442.011465289536,393.405444741677,611.761075029055,396.034886834416,423.519129316991,467.573766042799,506.359913786016,492.80148863591,559.389140433233,529.951518186106,497.162410669629,398.004959411698,390.979307635715,319.939093045782,355.070803054071,455.937046666813,394.742040928029,203.499099031251,330.400600827689,283.677430796477,242.874817356625,217.363167282328,206.366146896345,230.434320185914,267.864915327092,203.462363743887,221.450032382929,219.432363543134,396.741439469286,461.568430845558,398.328703706488,307.95919558913,479.234821349213,280.767434370232,466.202155169784,482.224205893225,418.810253462,386.869550334029,311.907609168346,309.634864950516,344.843309282003,365.092067212714,325.539527759695,366.638595535893,445.201552029686,209.301216431753,198.730683071494,188.281400771209,184.878161898733,390.364756485116,419.057827495983,432.881059849156,398.280345696962,306.388462654219,251.009423309258,277.650975949965,473.652863460509,277.470475876288,280.616968612116,216.703066134229,350.087151855822,437.458236925802,378.540101453608,306.863318649046,231.558095131735,357.247148994226,350.614096672178,359.019697225459,224.302317008845,393.701404646034,354.435021430266,399.028824232561,315.84288370061,363.99930214855,596.464460288324,233.584737745265,351.953124301825,329.046425834445,328.853437635064,224.498135403079,61.9301990097322,95.2916017955984,316.758256206971,341.816674318462,354.864796624851,347.957820861494,350.060885397438,363.656893801644,169.146808669066,164.30480766527,175.653093813443,159.416839622571,215.203210775682,315.835512147197,196.455268544602,285.550518882108,331.929923086701,420.409089632426,268.284325194692,223.519999081243,214.286486527293,322.072858382981,224.409319563247,360.681602539398,202.525494108805,215.538373645079,137.984973719295,182.259006637081,195.293059029814,419.061727446681,473.091922260957,78.4969293856562,367.759244254536,371.787182247206,346.77964454982,300.031105303259,335.161621177447,236.605947260054,193.215682270766,240.254192158314,343.265772045942,342.838660417356,268.240983009186,158.622584171888,256.3982863936,90.6823941196793,350.55576628045,222.484010402335,333.56945499162,341.734391053356,315.166622684752,338.907796572526,369.519049971357,319.983396597156,464.242734822714,298.188717177795,290.291374973026,81.0043612124844,44.5543247926068,337.177236249995,359.215270552409,410.054890916591,266.459415874669,309.246185961211,236.023990542264,282.332703885292,330.615098574573,535.815488545786,556.10930864269,295.889820739221,564.933965285122,385.430247908261,544.577921626232,272.573776569645,524.405961777571,374.106853429778,527.63001901766,721.426351582357,395.125676470992,573.581695209956,401.180361406614,259.742586651471,355.115449009267,271.890756428776,369.336382160415,374.529125276517,415.741927587137,319.690693667402,346.688849103113,300.376366519408,154.885037006518,272.734157793783,117.414683149608,525.6644945322,509.646914058727,309.845509304351,333.966271044719,322.954780043866,284.117273758647,324.640371697685,339.534255947979,292.314276091236,355.553294807127,337.808003798931,132.867981832437,63.1087982115506,74.9064700623148,97.0257495144577,294.071680786648,308.607746036775,253.448869966322,203.514488830154,143.527507779814,395.292234927803,394.4425257586,230.42359417812,287.613390069676,455.072207954173,81.1262680222708,50.9568044786993,372.374862425205,408.538747132171,266.048101138372,250.187053969941,241.215452052414,341.125694956635,761.757039632741,831.014604907837,250.156478184796,341.178218573009,283.290995322316,261.517396823108,471.525833854199,457.791788995666,353.039696494628,365.036226773536,180.189859207649,980.399843412928,366.28148549502,384.386326212591,420.109664210443,379.232270012845,250.181703511146,127.202145710906,118.389621682147,184.758241704522,193.624168760358,197.926075119142,268.676846672744,154.965158565289,153.893904298148,408.494252022692,438.360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2664,288.425346215941,453.604416609075 | |||
|short_description=p1@CSDE1 | |||
}} |
Latest revision as of 07:28, 16 September 2015
Short description: | p1@CSDE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CSDE1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000261443, ENST00000339438, ENST00000524652, ENST00000525970, ENST00000529046, ENST00000533818, ENST00000534699_5end |
EntrezGene: | CSDE1 |
HGNC: | 29905 |
UniProt: | E9PNG3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.82e-11 | 72 |
myeloid cell | 1.72e-10 | 108 |
common myeloid progenitor | 1.72e-10 | 108 |
classical monocyte | 3.43e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.43e-10 | 42 |
myeloid lineage restricted progenitor cell | 1.15e-09 | 66 |
connective tissue cell | 4.23e-09 | 361 |
mesenchymal cell | 6.16e-09 | 354 |
defensive cell | 1.60e-08 | 48 |
phagocyte | 1.60e-08 | 48 |
monopoietic cell | 2.28e-08 | 59 |
monocyte | 2.28e-08 | 59 |
monoblast | 2.28e-08 | 59 |
promonocyte | 2.28e-08 | 59 |
granulocyte monocyte progenitor cell | 2.47e-08 | 67 |
macrophage dendritic cell progenitor | 4.11e-08 | 61 |
leukocyte | 4.71e-07 | 136 |
motile cell | 5.66e-07 | 386 |
hematopoietic oligopotent progenitor cell | 6.84e-07 | 161 |
hematopoietic multipotent progenitor cell | 6.84e-07 | 161 |
hematopoietic stem cell | 6.95e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.65e-08 | 371 |
skeletal element | 4.82e-07 | 90 |