FFCP PHASE2:Hg19::chr5:151304337..151304405,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:2741 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:4326 |TSSclass...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=2741 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=4326 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P23415,E5RJ70,Q14C71 | ||
|association_with_transcript=0bp_to_ENST00000274576,ENST00000455880,ENST00000462581,ENST00000471351,ENST00000545569,NM_000171,NM_001146040,uc003lur.2,uc003lus.2,uc003lut.2_5end | |association_with_transcript=0bp_to_ENST00000274576,ENST00000455880,ENST00000462581,ENST00000471351,ENST00000545569,NM_000171,NM_001146040,uc003lur.2,uc003lus.2,uc003lut.2_5end | ||
|cluster_id=chr5:151304337..151304405,- | |cluster_id=chr5:151304337..151304405,- | ||
Latest revision as of 10:50, 16 September 2015
| Short description: | p1@GLRA1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_GLRA1_5end |
| Coexpression cluster: | C993_locus_medulla_spinal_pons_small_cerebellum_amygdala |
| Association with transcript: | 0bp_to_ENST00000274576, ENST00000455880, ENST00000462581, ENST00000471351, ENST00000545569, NM_000171, NM_001146040, uc003lur.2, uc003lus.2, uc003lut.2_5end |
| EntrezGene: | GLRA1 |
| HGNC: | 4326 |
| UniProt: | P23415E5RJ70Q14C71 |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p1@GLRA1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| posterior neural tube | 4.42e-84 | 15 |
| chordal neural plate | 4.42e-84 | 15 |
| brainstem | 9.48e-64 | 6 |
| segmental subdivision of hindbrain | 9.53e-56 | 12 |
| hindbrain | 9.53e-56 | 12 |
| presumptive hindbrain | 9.53e-56 | 12 |
| segmental subdivision of nervous system | 2.09e-51 | 13 |
| neural tube | 6.61e-45 | 56 |
| neural rod | 6.61e-45 | 56 |
| future spinal cord | 6.61e-45 | 56 |
Showing 1 to 10 of 58 entries
