FFCP PHASE1:Hg19::chr19:17356436..17356481,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2063 | |EntrezGene=2063 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7977 | |HGNC=7977 | ||
|TSSclassifier=strong | |||
|UniProt=P10588,F1D8R3 | |UniProt=P10588,F1D8R3 | ||
|association_with_transcript=-285bp_to_ENST00000291442,NM_005234,uc002nfq.2_5end | |association_with_transcript=-285bp_to_ENST00000291442,NM_005234,uc002nfq.2_5end | ||
|cluster_id=chr19:17356436..17356481,- | |||
|description=CAGE_peak_3_at_NR2F6_5end | |description=CAGE_peak_3_at_NR2F6_5end | ||
|id=chr19:17356436..17356481,- | |id=chr19:17356436..17356481,- | ||
|ontology_enrichment_celltype=CL:0000066!2.66e-17!254;CL:0002321!4.34e-14!248;CL:0000220!2.37e-13!246;CL:0000548!2.95e-09!679;CL:0000004!2.95e-09!679;CL:0000255!2.95e-09!679;CL:0000012!1.09e-08!682;CL:0000055!2.24e-08!180;CL:1000497!1.12e-07!18;CL:0002518!1.12e-07!18;CL:1000449!1.68e-07!16 | |ontology_enrichment_celltype=CL:0000066!2.66e-17!254;CL:0002321!4.34e-14!248;CL:0000220!2.37e-13!246;CL:0000548!2.95e-09!679;CL:0000004!2.95e-09!679;CL:0000255!2.95e-09!679;CL:0000012!1.09e-08!682;CL:0000055!2.24e-08!180;CL:1000497!1.12e-07!18;CL:0002518!1.12e-07!18;CL:1000449!1.68e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:1000449;2.21e-09;15!CL:1000497;1.21e-08;17!CL:0002518;1.21e-08;17!CL:1000507;5.57e-08;10!CL:1000494;5.57e-08;10!CL:0002681;1.57e-07;12!CL:0002584;1.57e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.62e-11,253;CL:1000449,1.07e-09,15;CL:1000497,4.04e-09,17;CL:0002518,4.04e-09,17;CL:1000507,1.92e-08,10;CL:1000494,1.92e-08,10;CL:0002321,3.69e-08,250;CL:0002681,1.35e-07,12;CL:0002584,1.35e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!1.09e-15!238;UBERON:0009142!1.09e-15!238;UBERON:0002100!4.87e-15!216;UBERON:0000481!8.16e-14!347;UBERON:0005256!9.50e-13!143;UBERON:0009569!4.71e-12!113;UBERON:0002417!6.51e-12!61;UBERON:0000916!6.51e-12!61;UBERON:0005172!3.87e-11!55;UBERON:0005173!3.87e-11!55;UBERON:0006554!1.41e-10!44;UBERON:0001008!7.57e-10!45;UBERON:0002113!1.59e-09!27;UBERON:0003918!1.59e-09!27;UBERON:0005095!1.59e-09!27;UBERON:0007687!1.59e-09!27;UBERON:0003914!1.75e-09!118;UBERON:0005177!2.35e-09!107;UBERON:0000466!3.87e-09!126;UBERON:0000490!1.07e-08!138;UBERON:0001048!1.07e-08!168;UBERON:0000475!1.50e-08!365;UBERON:0003064!3.41e-08!37;UBERON:0006555!4.04e-08!17;UBERON:0005103!4.04e-08!17;UBERON:0000083!4.04e-08!17;UBERON:0009201!4.04e-08!17;UBERON:0004819!4.04e-08!17;UBERON:0006553!4.04e-08!17;UBERON:0003074!4.04e-08!17;UBERON:0003060!4.04e-08!17;UBERON:0004119!4.05e-08!169;UBERON:0000925!4.05e-08!169;UBERON:0006595!4.05e-08!169;UBERON:0004876!4.26e-08!20;UBERON:0000080!6.57e-08!18;UBERON:0002120!6.57e-08!18;UBERON:0004875!6.57e-08!18;UBERON:0005721!6.57e-08!18;UBERON:0005754!6.57e-08!18;UBERON:0007297!6.57e-08!18;UBERON:0003886!1.40e-07!63;UBERON:0001007!1.64e-07!155;UBERON:0001555!1.64e-07!155;UBERON:0007026!1.64e-07!155;UBERON:0004211!1.68e-07!16;UBERON:0001285!1.68e-07!16;UBERON:0007684!1.68e-07!16;UBERON:0003220!1.68e-07!16;UBERON:0004208!1.68e-07!16;UBERON:0004921!6.40e-07!129;UBERON:0004185!6.40e-07!129;UBERON:0000058!8.56e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;2.54e-10;24!UBERON:0011143;2.54e-10;24!UBERON:0006555;2.21e-09;15!UBERON:0004819;2.21e-09;15!UBERON:0001285;2.21e-09;15!UBERON:0007684;2.21e-09;15!UBERON:0006554;1.80e-08;30!UBERON:0001008;1.80e-08;30!UBERON:0004211;5.57e-08;10!UBERON:0009773;5.57e-08;10!UBERON:0001231;5.57e-08;10!UBERON:0004810;5.57e-08;10!UBERON:0001225;1.57e-07;12!UBERON:0008987;1.57e-07;12!UBERON:0000489;3.30e-07;29!UBERON:0000353;4.65e-07;15 | |||
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| ||
|short_description=p3@NR2F6 | |short_description=p3@NR2F6 | ||
}} | }} |
Latest revision as of 11:15, 16 September 2015
Short description: | p3@NR2F6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NR2F6_5end |
Coexpression cluster: | NA |
Association with transcript: | -285bp_to_ENST00000291442, NM_005234, uc002nfq.2_5end |
EntrezGene: | NR2F6 |
HGNC: | 7977 |
UniProt: | P10588F1D8R3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.62e-11 | 253 |
epithelial cell of nephron | 1.07e-09 | 15 |
kidney cell | 4.04e-09 | 17 |
kidney epithelial cell | 4.04e-09 | 17 |
kidney tubule cell | 1.92e-08 | 10 |
nephron tubule epithelial cell | 1.92e-08 | 10 |
embryonic cell | 3.69e-08 | 250 |
kidney cortical cell | 1.35e-07 | 12 |
renal cortical epithelial cell | 1.35e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 1.06e-11 | 47 |
mesenchyme | 1.94e-11 | 160 |
entire embryonic mesenchyme | 1.94e-11 | 160 |
renal system | 3.47e-11 | 48 |
abdomen element | 6.64e-11 | 54 |
abdominal segment element | 6.64e-11 | 54 |
kidney | 7.13e-11 | 26 |
kidney mesenchyme | 7.13e-11 | 26 |
upper urinary tract | 7.13e-11 | 26 |
kidney rudiment | 7.13e-11 | 26 |
kidney field | 7.13e-11 | 26 |
trunk | 1.01e-10 | 199 |
abdominal segment of trunk | 1.23e-10 | 60 |
abdomen | 1.23e-10 | 60 |
excretory tube | 1.60e-10 | 16 |
kidney epithelium | 1.60e-10 | 16 |
nephron epithelium | 1.07e-09 | 15 |
renal tubule | 1.07e-09 | 15 |
nephron tubule | 1.07e-09 | 15 |
nephron | 1.07e-09 | 15 |
uriniferous tubule | 1.07e-09 | 15 |
nephrogenic mesenchyme | 1.07e-09 | 15 |
subdivision of trunk | 1.31e-09 | 112 |
trunk region element | 9.45e-09 | 101 |
nephron tubule epithelium | 1.92e-08 | 10 |
cavitated compound organ | 9.02e-08 | 31 |
cortex of kidney | 1.35e-07 | 12 |
renal parenchyma | 1.35e-07 | 12 |
parenchyma | 3.20e-07 | 15 |