FFCP PHASE1:Hg19::chr4:16085314..16085334,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:16085314..16085334,- to FFCP PHASE1:Hg19::chr4:16085314..16085334,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8842 | |EntrezGene=8842 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9454 | |HGNC=9454 | ||
|TSSclassifier=strong | |||
|UniProt=O43490 | |UniProt=O43490 | ||
|association_with_transcript=0bp_to_ENST00000510224_5end | |||
|cluster_id=chr4:16085314..16085334,- | |||
|description=CAGE_peak_5_at_PROM1_5end | |||
|id=chr4:16085314..16085334,- | |||
|ontology_enrichment_celltype=CL:0000047!9.73e-13!8;CL:0002319!9.49e-11!25;CL:0000540!1.04e-09!6;CL:0000031!1.04e-09!6;CL:0000404!1.04e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0002605;2.23e-21;3!CL:0000039;7.09e-16;7!CL:0000586;7.09e-16;7!CL:0002319;1.96e-11;25!CL:0000128;1.84e-09;7!CL:0000126;1.84e-09;7!CL:0000127;1.84e-09;7!CL:0002032;2.52e-08;1!CL:0000557;2.52e-08;1!CL:0002174;7.09e-08;1!CL:0000037;7.09e-08;1!CL:0001024;7.09e-08;1!CL:0000501;7.09e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,3.37e-21,3;CL:0000039,6.22e-16,7;CL:0000586,6.22e-16,7;CL:0002319,2.09e-11,25;CL:0000128,2.18e-09,7;CL:0000126,2.18e-09,7;CL:0000127,2.18e-09,7;CL:0002453,2.18e-09,7;CL:0000047,4.45e-08,8;CL:0001024,6.19e-08,1;CL:0002174,8.12e-08,1;CL:0000501,8.12e-08,1;CL:0000133,1.60e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.68e-11;10!UBERON:0005564;3.68e-11;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;1.18e-07;22!DOID:2994;1.18e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.12e-07,22;DOID:2994,1.12e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.55e-31!82;UBERON:0005743!5.16e-31!86;UBERON:0000073!2.50e-28!94;UBERON:0001016!2.50e-28!94;UBERON:0001049!5.59e-23!57;UBERON:0005068!5.59e-23!57;UBERON:0006241!5.59e-23!57;UBERON:0007135!5.59e-23!57;UBERON:0000955!2.53e-22!69;UBERON:0006238!2.53e-22!69;UBERON:0002020!2.29e-21!34;UBERON:0003528!2.29e-21!34;UBERON:0001893!3.11e-21!34;UBERON:0002791!2.35e-20!33;UBERON:0002616!3.72e-20!59;UBERON:0002780!1.26e-19!41;UBERON:0001890!1.26e-19!41;UBERON:0006240!1.26e-19!41;UBERON:0001869!3.34e-19!32;UBERON:0003080!5.57e-19!42;UBERON:0003075!2.58e-18!86;UBERON:0007284!2.58e-18!86;UBERON:0002346!5.48e-17!90;UBERON:0000956!9.25e-16!25;UBERON:0000203!9.25e-16!25;UBERON:0003056!1.50e-15!61;UBERON:0007023!1.35e-14!115;UBERON:0004121!1.50e-14!169;UBERON:0000924!7.22e-14!173;UBERON:0006601!7.22e-14!173;UBERON:0001950!3.01e-13!20;UBERON:0000153!9.66e-13!129;UBERON:0007811!9.66e-13!129;UBERON:0000033!2.29e-12!123;UBERON:0002619!9.64e-12!22;UBERON:0002298!1.58e-08!8;UBERON:0000064!2.35e-08!219;UBERON:0000922!3.87e-07!612;UBERON:0000025!4.25e-07!194;UBERON:0002308!4.48e-07!9;UBERON:0000125!4.48e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.50e-14;8!UBERON:0000922;1.13e-13;49!UBERON:0003135;3.71e-10;11!UBERON:0000956;4.93e-09;25!UBERON:0000203;4.93e-09;25!UBERON:0002791;6.50e-07;32!UBERON:0001869;7.21e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.80e-14,8;UBERON:0003135,3.42e-10,11;UBERON:0001016,5.61e-10,89;UBERON:0001017,1.68e-09,81;UBERON:0000956,5.31e-09,25;UBERON:0000203,5.31e-09,25;UBERON:0002791,5.68e-07,32;UBERON:0001869,5.68e-07,32 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.44213566540748,1.09499540058307,10.5455817259634,0,0,0,0,0,0,0,0,0,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,1.12101712596307,1.31692042387539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.662648841607426,1.2781333715647,0.518305275076852,0,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.860919069801795,0,0,0,0,0,0,0,0,0.927443239800615,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,1.30139853857622,3.09315525111078,1.67516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0.462092022626489,0,0,0.422206515571503,0,0,0.215915916102139,0,0,0.501689773854853,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957526850661834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.597743964753209,0,0,0.715880777515084,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,3.99227596002388,0,0,0,0,0,0,0,0.291604613383254,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0.176915129006678,1.83309043480088,0,0,0,0.404406797884062,0,0.702793337176017,0,0,0,0,3.62972148145992,0.91821828489147,0,0,0,0,0,0,0,0.853828638089378,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.451961481561065,0,0,0.0633107959558787,0,0,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,3.83239764200917,1.28929632425987,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0.157566364614447,0.0824158583811665,0.26961417541674,0.295282444544246,0,0,0,0.160753148465019,0.412618309791701,0.415440338029185,0,0,0.242998226632099,0,0.709251365692784,1.25891011523995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0.1251909307065,0.573409195690071,0.332787154610557,0.434674820589684,0.276697269872462,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.12142462764199,0,0,0,0,0,0,0,0,0,0.3062454773532,0.385375350578757,0,0.638535436228605,0.41023272848151,2.52071696221718,0.345786262321089,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.507326481551255,2.7348740450911,0.548257766857182,0.496211178389294,0,0,0,0,0,0,0.443511850813194,0,0,0.475788130837822,0.263091094251396,0,0,0.078493092850514,0,0,1.82631744101899,0,0,0.571812353413251,1.42212250559454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0.731507549893617,0,0,0,0.485710993059139,0.467878926924211,0,0,0,0.439762066981716,1.05673990496671,0.540219106755613,0.437119121007915,0.470317296361523,0.490296643507811,0,0,0,1.6906229103336,0,0,0,0,0,0,0,0.730336388246517,0,0.143339583151451,0.157771562193185,0.339957450954573,0,0,0,0,0,0.883164973845552,0.874124575709564,0,3.56960904096936,2.40495664739004,5.60558887162554,1.75495277504663,0,0,0,0.103432995861895,0,0.476128862927481,0.0645889098360061,0,0,0,0.202117188958219,0,0,0.0673520530145875,0.286888821570705,0.332660356546013,0,0,0,1.61685363791856,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.44213566540748,1.09499540058307,10.5455817259634,0,0,0,0,0,0,0,0,0,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,1.12101712596307,1.31692042387539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.662648841607426,1.2781333715647,0.518305275076852,0,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.860919069801795,0,0,0,0,0,0,0,0,0.927443239800615,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,1.30139853857622,3.09315525111078,1.67516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0.462092022626489,0,0,0.422206515571503,0,0,0.215915916102139,0,0,0.501689773854853,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957526850661834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.597743964753209,0,0,0.715880777515084,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,3.99227596002388,0,0,0,0,0,0,0,0.291604613383254,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0.176915129006678,1.83309043480088,0,0,0,0.404406797884062,0,0.702793337176017,0,0,0,0,3.62972148145992,0.91821828489147,0,0,0,0,0,0,0,0.853828638089378,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.451961481561065,0,0,0.0633107959558787,0,0,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,3.83239764200917,1.28929632425987,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0.157566364614447,0.0824158583811665,0.26961417541674,0.295282444544246,0,0,0,0.160753148465019,0.412618309791701,0.415440338029185,0,0,0.242998226632099,0,0.709251365692784,1.25891011523995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0.1251909307065,0.573409195690071,0.332787154610557,0.434674820589684,0.276697269872462,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.12142462764199,0,0,0,0,0,0,0,0,0,0.3062454773532,0.385375350578757,0,0.638535436228605,0.41023272848151,2.52071696221718,0.345786262321089,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.507326481551255,2.7348740450911,0.548257766857182,0.496211178389294,0,0,0,0,0,0,0.443511850813194,0,0,0.475788130837822,0.263091094251396,0,0,0.078493092850514,0,0,1.82631744101899,0,0,0.571812353413251,1.42212250559454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0.731507549893617,0,0,0,0.485710993059139,0.467878926924211,0,0,0,0.439762066981716,1.05673990496671,0.540219106755613,0.437119121007915,0.470317296361523,0.490296643507811,0,0,0,1.6906229103336,0,0,0,0,0,0,0,0.730336388246517,0,0.143339583151451,0.157771562193185,0.339957450954573,0,0,0,0,0,0.883164973845552,0.874124575709564,0,3.56960904096936,2.40495664739004,5.60558887162554,1.75495277504663,0,0,0,0.103432995861895,0,0.476128862927481,0.0645889098360061,0,0,0,0.202117188958219,0,0,0.0673520530145875,0.286888821570705,0.332660356546013,0,0,0,1.61685363791856,0,0,0,0,0,0 | ||
|short_description=p5@PROM1 | |||
}} | }} |
Latest revision as of 12:47, 16 September 2015
Short description: | p5@PROM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PROM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000510224_5end |
EntrezGene: | PROM1 |
HGNC: | 9454 |
UniProt: | O43490 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 3.37e-21 | 3 |
germ line cell | 6.22e-16 | 7 |
germ cell | 6.22e-16 | 7 |
neural cell | 2.09e-11 | 25 |
oligodendrocyte | 2.18e-09 | 7 |
macroglial cell | 2.18e-09 | 7 |
astrocyte | 2.18e-09 | 7 |
oligodendrocyte precursor cell | 2.18e-09 | 7 |
neuronal stem cell | 4.45e-08 | 8 |
CD34-positive, CD38-negative hematopoietic stem cell | 6.19e-08 | 1 |
follicular cell of ovary | 8.12e-08 | 1 |
granulosa cell | 8.12e-08 | 1 |
neurectodermal cell | 1.60e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 5.80e-14 | 8 |
male reproductive organ | 3.42e-10 | 11 |
nervous system | 5.61e-10 | 89 |
central nervous system | 1.68e-09 | 81 |
cerebral cortex | 5.31e-09 | 25 |
pallium | 5.31e-09 | 25 |
regional part of telencephalon | 5.68e-07 | 32 |
cerebral hemisphere | 5.68e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.12e-07 | 22 |
germ cell cancer | 1.12e-07 | 22 |