FFCP PHASE1:Hg19::chr9:139746582..139746595,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=158056 | |EntrezGene=158056 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24083 | |HGNC=24083 | ||
|TSSclassifier=strong | |||
|UniProt=Q6UXC1 | |UniProt=Q6UXC1 | ||
|association_with_transcript=-223bp_to_ENST00000317446,ENST00000445819,NM_206920,uc004cjs.2,uc011mej.1_5end | |association_with_transcript=-223bp_to_ENST00000317446,ENST00000445819,NM_206920,uc004cjs.2,uc011mej.1_5end | ||
|cluster_id=chr9:139746582..139746595,+ | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_5_at_MAMDC4_5end | |description=CAGE_peak_5_at_MAMDC4_5end | ||
|id=chr9:139746582..139746595,+ | |id=chr9:139746582..139746595,+ | ||
|ontology_enrichment_celltype=CL:0000181!2.85e-07!12;CL:0000417!2.85e-07!12;CL:0000668!2.85e-07!12;CL:0000414!2.85e-07!12;CL:0000412!2.85e-07!12;CL:0000182!2.85e-07!12 | |ontology_enrichment_celltype=CL:0000181!2.85e-07!12;CL:0000417!2.85e-07!12;CL:0000668!2.85e-07!12;CL:0000414!2.85e-07!12;CL:0000412!2.85e-07!12;CL:0000182!2.85e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.46e-15;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.50e-15,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000029!5.79e-10!1;UBERON:0002107!8.86e-08!19;UBERON:0006925!8.86e-08!19;UBERON:0008836!8.86e-08!19;UBERON:0000160!9.99e-08!27;UBERON:0008835!9.89e-07!22;UBERON:0003894!9.89e-07!22 | |ontology_enrichment_uberon=UBERON:0000029!5.79e-10!1;UBERON:0002107!8.86e-08!19;UBERON:0006925!8.86e-08!19;UBERON:0008836!8.86e-08!19;UBERON:0000160!9.99e-08!27;UBERON:0008835!9.89e-07!22;UBERON:0003894!9.89e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.54e-17;19!UBERON:0006925;3.54e-17;19!UBERON:0002108;7.82e-17;4!UBERON:0002423;3.72e-13;25!UBERON:0002365;5.02e-11;31!UBERON:0002330;5.02e-11;31!UBERON:0000160;1.56e-10;17!UBERON:0002368;6.10e-09;33!UBERON:0005409;2.25e-08;22!UBERON:0002114;7.50e-08;2!UBERON:0000949;1.44e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.61e-17,19;UBERON:0006925,3.61e-17,19;UBERON:0008836,3.61e-17,19;UBERON:0002108,6.94e-17,4;UBERON:0008835,6.91e-15,22;UBERON:0003894,6.91e-15,22;UBERON:0009854,2.94e-14,23;UBERON:0007499,3.78e-13,25;UBERON:0009497,3.78e-13,25;UBERON:0000015,3.78e-13,25;UBERON:0002423,3.78e-13,25;UBERON:0006235,3.78e-13,25;UBERON:0004161,3.78e-13,25;UBERON:0009856,1.17e-12,26;UBERON:0002365,1.12e-10,31;UBERON:0002330,1.12e-10,31;UBERON:0000160,1.51e-10,17;UBERON:0002368,1.71e-09,35;UBERON:0004921,6.16e-08,118;UBERON:0002114,6.78e-08,2;UBERON:0005409,1.75e-07,25;UBERON:0000949,1.88e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,6.87979051674338,3.54473944008842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.709476419318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95403963262472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22206028986725,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,9.52589518907536,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0.306345576763462,0.983617892129413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.308696632431779,4.5897507705831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.803892390468535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,6.87979051674338,3.54473944008842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.709476419318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95403963262472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22206028986725,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,9.52589518907536,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0.306345576763462,0.983617892129413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.308696632431779,4.5897507705831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.803892390468535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@MAMDC4 | |short_description=p5@MAMDC4 | ||
}} | }} |
Latest revision as of 13:54, 16 September 2015
Short description: | p5@MAMDC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_MAMDC4_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -223bp_to_ENST00000317446, ENST00000445819, NM_206920, uc004cjs.2, uc011mej.1_5end |
EntrezGene: | MAMDC4 |
HGNC: | 24083 |
UniProt: | Q6UXC1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.50e-15 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 3.61e-17 | 19 |
digestive gland | 3.61e-17 | 19 |
liver bud | 3.61e-17 | 19 |
small intestine | 6.94e-17 | 4 |
hepatic diverticulum | 6.91e-15 | 22 |
liver primordium | 6.91e-15 | 22 |
digestive tract diverticulum | 2.94e-14 | 23 |
epithelial sac | 3.78e-13 | 25 |
epithelium of foregut-midgut junction | 3.78e-13 | 25 |
anatomical boundary | 3.78e-13 | 25 |
hepatobiliary system | 3.78e-13 | 25 |
foregut-midgut junction | 3.78e-13 | 25 |
septum transversum | 3.78e-13 | 25 |
sac | 1.17e-12 | 26 |
exocrine gland | 1.12e-10 | 31 |
exocrine system | 1.12e-10 | 31 |
intestine | 1.51e-10 | 17 |
endocrine gland | 1.71e-09 | 35 |
subdivision of digestive tract | 6.16e-08 | 118 |
duodenum | 6.78e-08 | 2 |
gastrointestinal system | 1.75e-07 | 25 |
endocrine system | 1.88e-07 | 45 |