FFCP PHASE1:Hg19::chr7:139478030..139478092,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:139478030..139478092,+
|short_description=p4@TBXAS1
|description=CAGE_peak_4_at_TBXAS1_5end
|association_with_transcript=0bp_to_ENST00000263552,ENST0000042...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6916 | |EntrezGene=6916 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11609 | |HGNC=11609 | ||
|TSSclassifier=strong | |||
|UniProt=P24557,E7ESB5,Q53F23,Q96CN2 | |UniProt=P24557,E7ESB5,Q53F23,Q96CN2 | ||
|association_with_transcript=0bp_to_ENST00000263552,ENST00000425687,ENST00000474763,ENST00000481440,NM_001130966,NM_001166254_5end | |||
|cluster_id=chr7:139478030..139478092,+ | |||
|description=CAGE_peak_4_at_TBXAS1_5end | |||
|id=chr7:139478030..139478092,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.20e-11!180;CL:1000497!1.78e-08!18;CL:0002518!1.78e-08!18;CL:0000057!1.96e-08!75;CL:1000507!1.55e-07!12;CL:1000494!1.55e-07!12;CL:1000449!2.37e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000497;3.86e-12;17!CL:0002518;3.86e-12;17!CL:1000449;2.07e-10;15!CL:1000507;6.56e-10;10!CL:1000494;6.56e-10;10!CL:0002681;1.56e-07;12!CL:0002584;1.56e-07;12!CL:0000680;1.79e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,5.07e-12,17;CL:0002518,5.07e-12,17;CL:1000449,2.61e-10,15;CL:1000507,5.81e-10,10;CL:1000494,5.81e-10,10;CL:0000057,3.51e-08,76;CL:0002681,1.90e-07,12;CL:0002584,1.90e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!2.03e-10!347;UBERON:0000475!2.48e-09!365;UBERON:0005256!8.98e-09!143;UBERON:0002100!3.21e-08!216;UBERON:0000119!4.50e-08!312;UBERON:0003104!4.59e-08!238;UBERON:0009142!4.59e-08!238;UBERON:0000483!5.34e-08!309;UBERON:0009773!1.55e-07!12;UBERON:0001231!1.55e-07!12;UBERON:0004810!1.55e-07!12;UBERON:0004211!2.37e-07!16;UBERON:0001285!2.37e-07!16;UBERON:0007684!2.37e-07!16;UBERON:0003220!2.37e-07!16;UBERON:0004208!2.37e-07!16;UBERON:0002113!4.75e-07!27;UBERON:0003918!4.75e-07!27;UBERON:0005095!4.75e-07!27;UBERON:0007687!4.75e-07!27;UBERON:0006555!4.81e-07!17;UBERON:0005103!4.81e-07!17;UBERON:0000083!4.81e-07!17;UBERON:0009201!4.81e-07!17;UBERON:0004819!4.81e-07!17;UBERON:0006553!4.81e-07!17;UBERON:0003074!4.81e-07!17;UBERON:0003060!4.81e-07!17;UBERON:0000080!7.78e-07!18;UBERON:0002120!7.78e-07!18;UBERON:0004875!7.78e-07!18;UBERON:0005721!7.78e-07!18;UBERON:0005754!7.78e-07!18;UBERON:0007297!7.78e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.07e-10;15!UBERON:0004819;2.07e-10;15!UBERON:0001285;2.07e-10;15!UBERON:0007684;2.07e-10;15!UBERON:0002113;4.10e-10;24!UBERON:0011143;4.10e-10;24!UBERON:0004211;6.56e-10;10!UBERON:0009773;6.56e-10;10!UBERON:0001231;6.56e-10;10!UBERON:0004810;6.56e-10;10!UBERON:0000489;2.74e-08;29!UBERON:0006554;8.38e-08;30!UBERON:0001008;8.38e-08;30!UBERON:0001225;1.56e-07;12!UBERON:0008987;1.56e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,2.48e-14,160;UBERON:0009142,2.48e-14,160;UBERON:0004211,2.61e-10,15;UBERON:0009773,2.61e-10,15;UBERON:0001231,2.61e-10,15;UBERON:0001285,2.61e-10,15;UBERON:0007684,2.61e-10,15;UBERON:0004208,2.61e-10,15;UBERON:0004810,5.81e-10,10;UBERON:0006555,2.27e-09,16;UBERON:0004819,2.27e-09,16;UBERON:0002113,8.75e-09,26;UBERON:0003918,8.75e-09,26;UBERON:0011143,8.75e-09,26;UBERON:0005095,8.75e-09,26;UBERON:0007687,8.75e-09,26;UBERON:0002100,2.29e-08,199;UBERON:0005256,2.33e-08,122;UBERON:0007503,3.75e-08,78;UBERON:0001225,1.90e-07,12;UBERON:0008987,1.90e-07,12;UBERON:0006554,2.49e-07,47;UBERON:0000489,2.73e-07,31;UBERON:0005172,4.06e-07,54;UBERON:0005173,4.06e-07,54;UBERON:0001008,5.15e-07,48 | |||
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|phase1_expression=1.99846217197612,0.214100523890983,0.422863212287913,0,0.446961094427288,0.872338524100369,0,5.05375898741465,3.13422753839806,0.737201809504527,4.18680700783456,2.18441372130172,0.263766978228454,6.18831764800233,5.63375538737457,0,1.20538905604795,0,0,1.35433163884467,1.42800483870977,0,1.14494394852423,1.64249310087461,2.51085279189606,0.152826811495903,0.246301768349837,0.236132343941038,0.786728553697808,0.383829398097213,0.309632246632152,0,0.6024118375565,0,0,0,0.880801318004542,0,0.200544447470142,0,0.223915474239924,0,0,0.290796477559129,1.13362783106643,0.242584061187816,0.232429036905685,0.411167888021826,0.309706370895104,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0.852449501065388,0.290209238628584,0,0.622822248995575,0.251248665256743,0,0.217188844705117,0,0,0,0.211255286311942,0.212604299965044,0.209658645508376,0,0,0,0,0,0,0,0,0.889509253863555,0.426730222566507,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,0,0,1.04535523804977,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,2.68280343881454,3.70801429346238,0.722878304769133,0.50133791063589,0.434539556882471,0.795285947051099,0.973269740605272,6.80650683581289,2.88248216701333,4.12823492757692,0.261958150995425,0.728590576585084,1.11235332835329,0,0,0.132957960518865,0,0,0,0.993812036833525,0.860234595106124,1.38856200643038,0.56530794192401,0,0.825354125820202,0.835979866147242,0.516833518338658,0,0.33472061276467,0,0,0.24406205754817,0.735326160691737,0,0.357198913136319,0.673588117878509,0.225222960966644,0,0,0.183201743930407,0,3.87780264148325,0.872188104285069,0.993943903390637,0.633152558322899,0.397227542439656,2.29469296599051,1.41867352879343,0.560677600142307,0,0.24666754841716,9.64754209739275,2.2900814251847,6.04809041519797,6.81108424402191,2.30470369792,5.85803579584492,3.43376084513353,1.1409436430889,2.83952493048422,3.40560046066918,3.0755859429945,3.23036855415172,3.26646674007829,5.40470996171779,2.37649296704261,0,0.741800787835671,4.55080680969013,3.59309070908119,4.37673896280572,4.50426671539071,2.49357703935765,0.438977620880838,0.612975591598039,0.45071417671979,3.17610112848059,0.538168907066586,0.213557388818567,0.211931901159562,0.300091096084402,0.103052529238439,0,0,1.0126579934476,0.0974370051611986,0,0.184099797284599,0.323292113637624,0,0.201504196455281,1.52604533079439,0.57978255948989,0,0,0.243947412259191,0,0.116193942869518,0.310983165046111,0.252320850875628,0,0,0.643240938192885,5.52539685409922,0.928735856063958,2.16563844500876,0.118306800039844,0,0,0.220587945464788,0.435758888184812,0.949082476444386,0.269662616320329,0.392442930250692,0,0.738155454624648,1.40241773803446,2.057870056657,2.94017422771084,1.26755034821831,0,0.590789906681404,0,0.860919069801795,2.05881372358231,0,0,0.502644862058154,0.555530670951178,2.6064664424826,24.9584348467099,1.44331342025273,3.59384255422738,0.352226082707465,0,0.462985512576611,0,0.790204397959275,0,0,0,0.148631162288728,0,0.16798212819886,0,1.16426079513703,1.16253575405585,0.766765358330422,1.97065295158377,1.32072651019839,0.829312462163088,0.432359860250884,0.12624243342638,0.317489471460845,0,0,0,0.308482478109971,0.300343057843917,0.285826432630578,2.01835951821649,0,0.80672114403045,0.129271715757778,3.57656445851882,2.535908257668,0,0,4.62973273671856,2.83698264046557,4.52917704327369,2.43062589218851,3.7983512377401,3.29296134712308,3.90883421152482,1.77695974371273,3.16780749173372,0,4.35766729300147,0.099972991182057,0,0,0,0,0,9.98458335285029,2.02693829334611,8.01357657946495,2.32779252211864,0.112085143993527,0.197030760201927,0.215627574859517,1.15508732651774,0,0,1.54657762555539,0.335032530668698,0.637938751653163,0,0,0,3.80343624329334,1.00034104211935,3.25518028439683,0,0.356857977594324,0,0.234282829985426,0.300946099727719,0,1.03473071292505,0.664225598535437,1.84369168541703,0.0868836144680828,1.95801157462741,1.71571711905428,0,0.215714200818617,0.213455115606889,2.12189300012382,0,0.907170879989041,0.248107807818777,0.153461973288062,0.561320188866147,0.128139149255701,0.511707249066704,0.804269605718038,2.96836132889982,0.154209693802656,1.06537035187876,1.72467027628999,0.519254429183621,1.39452454151951,0.604297247958111,0.200506470303285,0.184161977871793,2.41110341145674,1.82091168006717,5.37610101333639,2.25599806453706,4.1588282036384,14.1182958451834,27.7664526841195,6.22754610467967,0,1.02056223165909,1.29549549661284,1.54227252690289,8.67028600140329,23.5794193711781,1.52925763827023,2.49322802678617,7.83561641527624,0,0,0.256450125116389,0.328014645699706,0,0.412164046590889,1.55668090191184,1.40266149865,0,1.30012049207304,0,0.193341436584244,5.5457502161272,5.2191249406884,3.99726060205139,5.37101224341368,6.0907011443976,4.51701125305335,0.979352392114111,0.330569830721956,0.576570202095319,2.67986696238627,0.6069466851333,0.464845549297286,0.94443704049192,0,0,1.06461206063404,0,0.55597265731176,0.572499546967965,0.744316738719335,1.265517698874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| ||
|short_description=p4@TBXAS1 | |||
}} | }} |
Latest revision as of 16:57, 16 September 2015
Short description: | p4@TBXAS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TBXAS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000263552, ENST00000425687, ENST00000474763, ENST00000481440, NM_001130966, NM_001166254_5end |
EntrezGene: | TBXAS1 |
HGNC: | 11609 |
UniProt: | P24557E7ESB5Q53F23Q96CN2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 5.07e-12 | 17 |
kidney epithelial cell | 5.07e-12 | 17 |
epithelial cell of nephron | 2.61e-10 | 15 |
kidney tubule cell | 5.81e-10 | 10 |
nephron tubule epithelial cell | 5.81e-10 | 10 |
fibroblast | 3.51e-08 | 76 |
kidney cortical cell | 1.90e-07 | 12 |
renal cortical epithelial cell | 1.90e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 2.48e-14 | 160 |
entire embryonic mesenchyme | 2.48e-14 | 160 |
nephron epithelium | 2.61e-10 | 15 |
renal tubule | 2.61e-10 | 15 |
nephron tubule | 2.61e-10 | 15 |
nephron | 2.61e-10 | 15 |
uriniferous tubule | 2.61e-10 | 15 |
nephrogenic mesenchyme | 2.61e-10 | 15 |
nephron tubule epithelium | 5.81e-10 | 10 |
excretory tube | 2.27e-09 | 16 |
kidney epithelium | 2.27e-09 | 16 |
kidney | 8.75e-09 | 26 |
kidney mesenchyme | 8.75e-09 | 26 |
upper urinary tract | 8.75e-09 | 26 |
kidney rudiment | 8.75e-09 | 26 |
kidney field | 8.75e-09 | 26 |
trunk | 2.29e-08 | 199 |
trunk mesenchyme | 2.33e-08 | 122 |
epithelial vesicle | 3.75e-08 | 78 |
cortex of kidney | 1.90e-07 | 12 |
renal parenchyma | 1.90e-07 | 12 |
urinary system structure | 2.49e-07 | 47 |
cavitated compound organ | 2.73e-07 | 31 |
abdomen element | 4.06e-07 | 54 |
abdominal segment element | 4.06e-07 | 54 |
renal system | 5.15e-07 | 48 |